Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.7e-134 482.6 238 100.0
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-112 410.2 206 97.6
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 1.4e-109 399.8 206 95.6
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 2.6e-103 379.0 204 91.2
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 4.7e-100 368.2 206 84.0
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.5e-98 363.2 206 86.4
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 2.3e-91 339.3 206 77.2
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 6.7e-91 337.8 206 77.2
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 5.7e-90 334.7 206 77.7
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 2.2e-89 332.8 206 75.2
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.6e-87 326.6 204 75.5
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 2.6e-87 325.9 206 72.3
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 7.7e-87 324.3 181 92.3
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.3e-86 323.6 206 74.3
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.9e-85 319.7 205 72.7
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.5e-85 319.3 181 84.0
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.2e-85 318.9 206 73.3
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.2e-85 318.9 206 73.3
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.2e-85 317.8 206 72.8
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.4e-85 317.4 206 72.3
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.6e-84 316.6 181 83.4
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.6e-84 315.5 206 71.8
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.7e-84 315.1 207 72.5
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 4.7e-84 315.1 206 71.8
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.1e-84 314.7 206 71.8
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.4e-83 313.5 207 74.9
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 4.0e-83 312.0 205 70.2
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 8.8e-83 310.8 205 71.2
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.6e-82 309.3 216 69.4
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 3.3e-82 308.9 208 71.2
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 3.3e-82 308.9 192 76.0
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 7.5e-82 307.8 204 71.6
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.7e-81 306.6 206 72.3
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.8e-81 305.8 207 72.5
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.8e-81 305.8 207 72.5
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 2.8e-81 305.8 207 70.0
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 3.7e-81 305.4 204 71.1
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.4e-80 303.5 206 71.8
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.8e-80 303.1 209 69.9
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 4.1e-80 302.0 205 69.8
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 5.3e-80 301.6 206 68.4
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 2.0e-79 299.7 209 68.4
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 2.7e-79 299.3 207 68.6
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 4.5e-79 298.5 206 68.0
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 5.9e-79 298.1 206 68.4
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 5.9e-79 298.1 206 68.0
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 2.2e-78 296.2 206 69.4
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.9e-78 295.8 206 68.4
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 5.0e-78 295.0 206 68.9
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 6.5e-78 294.7 206 65.5
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 6.5e-78 294.7 204 67.6
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 6.5e-78 294.7 206 68.9
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 8.5e-78 294.3 206 68.4
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 8.5e-78 294.3 192 74.5
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.1e-77 293.9 190 74.2
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.5e-77 293.5 207 68.6
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.9e-77 293.1 206 67.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 2.5e-77 292.7 206 67.5
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 4.2e-77 292.0 206 65.5
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.2e-77 292.0 209 65.1
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 4.2e-77 292.0 207 67.1
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 5.5e-77 291.6 206 67.0
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 5.5e-77 291.6 204 66.2
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 5.5e-77 291.6 188 72.9
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 7.2e-77 291.2 206 67.0
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 7.2e-77 291.2 206 67.0
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 7.2e-77 291.2 206 67.0
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 7.2e-77 291.2 205 69.8
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 1.2e-76 290.4 207 69.1
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.1e-76 289.7 228 61.0
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 3.6e-76 288.9 204 66.2
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 3.6e-76 288.9 204 64.7
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 4.7e-76 288.5 205 67.3
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 6.1e-76 288.1 206 67.5
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.0e-75 287.3 206 67.0
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.8e-75 286.6 206 65.0
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.8e-75 286.6 201 68.7
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 4.0e-75 285.4 201 68.7
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 5.2e-75 285.0 204 65.7
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 6.8e-75 284.6 200 66.0
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 6.8e-75 284.6 193 69.4
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 8.8e-75 284.3 205 67.3
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.2e-74 283.9 175 75.4
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.6e-74 282.7 200 65.0
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 5.7e-74 281.6 189 71.4
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 5.7e-74 281.6 204 64.7
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.7e-73 280.0 208 65.9
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.8e-73 279.3 212 67.0
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 4.8e-73 278.5 200 64.5
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 6.3e-73 278.1 215 65.6
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 4.1e-72 275.4 207 63.8
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 4.1e-72 275.4 195 65.6
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 9.1e-72 274.2 204 62.3
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 7.7e-71 271.2 204 65.2
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 1.0e-70 270.8 193 66.8
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.3e-69 265.8 206 60.7
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 4.2e-69 265.4 175 72.6
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.5e-69 265.0 179 70.9
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 4.7e-68 261.9 202 62.9
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 4.0e-67 258.8 200 61.5
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 8.9e-67 257.7 193 65.3
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.1e-64 248.8 177 68.9
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 5.4e-64 248.4 140 85.7
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.7e-62 243.4 204 54.9
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 6.6e-62 241.5 140 81.4
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.5e-61 239.6 192 60.9
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 6.4e-57 224.9 188 55.3
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.1e-56 224.2 181 63.0
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 5.4e-56 221.9 149 78.5
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 7.0e-56 221.5 140 76.4
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 3.0e-54 216.1 172 60.5
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 5.0e-54 215.3 168 69.0
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 2.5e-53 213.0 222 50.5
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.3e-53 212.6 138 73.9
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 8.9e-51 204.5 193 52.8
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 7.0e-48 194.9 130 70.8
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 3.0e-46 189.5 122 70.5
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 8.1e-44 181.4 118 72.9
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 8.1e-44 181.4 207 39.6
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 9.9e-42 174.5 207 46.4
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.2e-41 173.3 119 66.4
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.9e-41 172.9 119 70.6
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-40 171.0 109 72.5
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 3.5e-39 166.0 210 42.4
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.0e-38 164.5 114 66.7
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.3e-38 164.1 118 66.1
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.7e-38 163.7 116 68.1
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.1e-36 156.8 118 63.6
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 4.6e-31 139.0 151 46.4
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.9e-30 136.0 88 72.7
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.5e-29 134.0 193 38.9
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 3.4e-26 122.9 158 42.4
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 2.4e-16 90.1 49 81.6
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 2.8e-12 76.6 102 38.2
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-11 74.3 59 59.3
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.8e-11 73.9 54 55.6
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 9.3e-08 61.6 165 27.9


User provided reference genes

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