Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 4.8e-104 381.3 217 100.0
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.2e-89 333.6 232 85.8
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 3.9e-85 318.5 232 80.2
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 5.8e-81 304.7 232 78.0
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.2e-71 272.3 232 67.2
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.6e-70 270.0 232 65.9
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.7e-70 269.2 232 64.7
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 3.6e-67 258.8 261 58.2
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 2.3e-66 256.1 223 63.7
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.6e-65 252.7 232 62.5
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-63 247.3 226 63.3
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.4e-63 246.9 233 61.4
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 4.6e-62 241.9 233 56.2
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.3e-61 239.6 234 56.8
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.6e-61 237.7 235 56.6
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.1e-60 237.3 232 57.3
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-60 237.3 234 56.0
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.1e-60 237.3 239 58.2
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.9e-60 236.5 233 54.9
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 2.5e-60 236.1 237 57.4
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 2.5e-60 236.1 234 53.8
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 2.5e-60 236.1 233 55.8
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.2e-59 233.8 231 56.3
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-59 233.8 233 55.8
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.2e-59 233.8 232 56.5
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.2e-59 233.8 187 64.2
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 1.6e-59 233.4 239 63.2
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 1.6e-59 233.4 239 63.2
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 4.7e-59 231.9 233 64.4
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 6.2e-59 231.5 232 61.6
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.8e-58 229.9 232 55.2
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.4e-58 229.6 234 55.6
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 4.0e-58 228.8 232 54.7
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 5.2e-58 228.4 232 54.3
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 3.4e-57 225.7 232 61.6
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 7.6e-57 224.6 188 61.2
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 7.6e-57 224.6 237 55.3
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 7.6e-57 224.6 232 51.3
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 9.9e-57 224.2 262 50.0
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.3e-56 223.8 237 53.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.7e-56 223.4 231 62.8
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-56 223.0 144 80.6
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 3.8e-56 222.2 175 64.6
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 4.9e-56 221.9 188 63.3
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 8.4e-56 221.1 237 49.8
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.1e-55 220.7 233 58.4
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.4e-55 220.3 149 78.5
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.9e-55 219.9 232 53.9
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.2e-55 218.8 233 54.1
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.2e-55 218.8 233 54.1
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 4.2e-55 218.8 232 53.0
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.3e-55 217.6 234 53.8
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.2e-54 217.2 231 59.7
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.6e-54 216.9 236 56.4
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 2.7e-54 216.1 231 52.8
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.3e-53 213.8 233 57.9
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 2.3e-53 213.0 233 61.4
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 3.0e-53 212.6 234 52.1
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 6.6e-53 211.5 242 57.0
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 8.7e-53 211.1 238 52.1
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 8.7e-53 211.1 232 56.0
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 8.7e-53 211.1 170 66.5
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.5e-52 210.3 237 51.1
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.5e-52 210.3 237 53.2
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.5e-52 210.3 231 58.4
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.9e-52 209.9 234 51.3
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.9e-52 209.9 237 51.1
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.9e-52 209.9 233 54.5
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 3.3e-52 209.1 234 51.3
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 3.3e-52 209.1 234 51.3
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 3.3e-52 209.1 233 51.9
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 4.3e-52 208.8 234 50.9
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 4.3e-52 208.8 234 50.9
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 4.3e-52 208.8 233 50.6
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 7.3e-52 208.0 200 59.5
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.6e-52 207.6 216 54.2
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 2.1e-51 206.5 237 49.8
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 2.1e-51 206.5 239 51.9
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 2.8e-51 206.1 232 51.3
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.8e-51 206.1 184 55.4
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 3.6e-51 205.7 229 57.6
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 4.8e-51 205.3 234 49.6
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 8.1e-51 204.5 232 52.6
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.4e-50 203.8 232 50.4
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 2.4e-50 203.0 233 51.5
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 5.3e-50 201.8 247 48.6
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 6.9e-50 201.4 234 50.0
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 6.9e-50 201.4 228 52.6
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 6.9e-50 201.4 232 50.9
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.0e-49 199.9 232 49.6
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 4.5e-49 198.7 240 52.5
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 4.5e-49 198.7 232 49.1
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 9.9e-49 197.6 246 48.4
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.7e-48 196.8 235 49.8
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 2.9e-48 196.1 288 43.4
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 3.8e-48 195.7 232 48.7
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 4.9e-48 195.3 240 49.2
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.7e-46 189.5 234 47.4
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 6.0e-46 188.3 232 55.2
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 7.9e-46 188.0 233 49.8
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.3e-45 187.2 234 47.9
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 3.9e-45 185.7 183 55.2
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 3.9e-45 185.7 235 47.7
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 8.1e-43 177.9 126 69.8
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 2.4e-42 176.4 275 42.9
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.2e-41 174.1 170 54.7
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-41 173.7 237 49.4
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 3.4e-41 172.6 175 52.6
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.9e-40 168.7 183 53.6
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 6.4e-40 168.3 149 57.7
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.2e-39 166.0 154 55.8
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 9.3e-39 164.5 170 59.4
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 5.6e-36 155.2 170 54.7
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 6.2e-35 151.8 235 40.4
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.1e-35 151.4 223 46.2
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 4.0e-34 149.1 184 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 6.0e-30 135.2 180 42.8
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.3e-27 127.5 98 61.2
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 2.1e-27 126.7 219 38.4
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.4e-26 124.0 133 50.4
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 4.1e-26 122.5 170 41.8
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.0e-25 120.2 125 53.6
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 3.8e-24 115.9 156 42.9
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.2e-23 112.8 75 70.7
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.0e-21 106.3 86 61.6
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 7.4e-20 101.7 219 37.0
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.2e-17 94.4 221 31.7
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.7e-16 90.5 137 40.9
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 2.5e-15 86.7 163 38.0
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 4.2e-15 85.9 155 34.8
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 5.1e-13 79.0 186 37.1
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 1.1e-10 71.2 74 51.4
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 5.3e-10 68.9 33 87.9
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 7.7e-09 65.1 174 29.9
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 1.3e-08 64.3 204 25.5
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.2e-08 63.5 33 81.8
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.9e-08 63.2 31 83.9
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 5.0e-08 62.4 124 40.3


User provided reference genes

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