Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 4.0e-154 548.1 289 100.0
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 7.0e-143 510.8 289 93.8
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 3.3e-132 475.3 287 88.2
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 7.1e-127 457.6 289 79.6
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.2e-118 430.3 318 71.7
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.9e-112 409.1 264 79.5
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 6.4e-112 407.9 264 78.0
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 3.5e-110 402.1 299 68.6
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 3.5e-110 402.1 298 68.8
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 6.0e-110 401.4 290 68.3
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 3.9e-109 398.7 206 95.6
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 8.7e-109 397.5 250 75.6
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 5.6e-108 394.8 289 67.8
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.7e-107 392.1 291 67.4
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-106 390.2 292 66.8
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.8e-106 389.8 291 66.7
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 9.0e-106 387.5 291 64.6
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.6e-105 386.0 290 66.2
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 5.8e-105 384.8 290 65.9
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 8.4e-104 380.9 289 64.4
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.4e-103 380.2 289 67.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.4e-103 380.2 291 65.6
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.4e-103 380.2 294 69.4
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.2e-103 379.0 296 69.3
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.2e-103 379.0 296 69.3
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.2e-102 377.1 289 68.5
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.7e-102 375.9 291 69.1
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 3.5e-102 375.6 287 69.0
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.3e-101 373.6 235 74.9
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.3e-101 372.9 291 66.3
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.3e-101 372.9 291 66.3
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 8.7e-101 370.9 273 68.9
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.9e-100 369.8 277 68.2
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 5.6e-100 368.2 294 63.9
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 2.8e-99 365.9 290 63.8
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 8.2e-99 364.4 259 72.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 2.0e-97 359.8 290 66.2
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 3.4e-97 359.0 284 63.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 5.8e-97 358.2 275 67.3
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 7.6e-97 357.8 247 70.4
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.3e-96 357.1 319 58.3
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.7e-96 356.7 303 60.4
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 2.2e-96 356.3 290 64.8
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 2.9e-96 355.9 291 61.9
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 3.8e-96 355.5 293 61.8
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 6.5e-96 354.8 292 60.6
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 6.5e-96 354.8 284 62.7
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 8.4e-96 354.4 292 60.3
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 8.4e-96 354.4 290 63.1
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 8.4e-96 354.4 287 61.7
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 8.4e-96 354.4 292 61.6
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.4e-95 353.6 292 60.3
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.9e-95 353.2 292 59.9
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.9e-95 353.2 292 59.9
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 2.5e-95 352.8 289 61.9
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 3.2e-95 352.4 291 66.0
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 5.5e-95 351.7 303 59.4
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.1e-95 351.3 289 63.3
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.6e-94 350.1 288 62.5
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.7e-94 349.4 296 61.5
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.7e-94 349.4 289 61.9
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 3.5e-94 349.0 244 68.9
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.0e-93 347.4 287 61.0
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.0e-93 347.4 290 63.4
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 2.3e-93 346.3 291 64.3
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 2.3e-93 346.3 295 60.7
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 3.9e-93 345.5 232 71.6
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 5.1e-93 345.1 297 60.9
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 5.1e-93 345.1 287 61.7
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 6.7e-93 344.7 294 59.9
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 2.5e-92 342.8 295 60.3
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 4.3e-92 342.0 297 58.9
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 7.4e-92 341.3 289 59.2
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 9.7e-92 340.9 291 63.9
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.3e-91 340.5 265 64.2
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.6e-91 340.1 294 59.5
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 2.2e-91 339.7 223 77.1
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 2.8e-91 339.3 295 58.0
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 4.8e-91 338.6 293 61.4
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 6.3e-91 338.2 282 62.1
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-90 337.4 300 62.3
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.4e-90 337.0 277 66.4
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 4.1e-90 335.5 290 59.0
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 5.3e-90 335.1 287 61.3
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 6.9e-90 334.7 285 66.0
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 9.0e-90 334.3 347 52.4
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 2.0e-89 333.2 299 64.2
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 3.4e-89 332.4 285 60.0
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.7e-89 331.3 223 76.7
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.0e-88 330.9 258 63.6
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.3e-88 330.5 287 57.8
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.7e-88 330.1 287 58.9
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 6.5e-88 328.2 291 58.8
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 1.1e-87 327.4 283 60.4
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.5e-87 326.2 261 63.6
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 6.7e-85 318.2 232 80.2
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 3.3e-84 315.8 290 56.9
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 1.7e-83 313.5 235 62.1
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.2e-83 313.2 292 55.1
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 3.7e-83 312.4 328 50.9
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 3.1e-82 309.3 290 54.5
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.2e-78 297.4 242 62.0
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 6.1e-78 295.0 207 65.7
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.0e-77 292.7 212 64.2
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.0e-76 290.0 283 54.1
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.4e-74 283.9 237 62.0
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 4.5e-73 278.9 225 64.4
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 6.5e-72 275.0 255 56.9
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.3e-67 260.8 149 90.6
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 3.8e-64 249.2 282 49.3
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.7e-59 233.8 162 69.8
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.7e-57 226.5 202 55.9
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 7.7e-57 224.9 181 63.5
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 7.7e-57 224.9 188 56.4
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.8e-56 222.6 225 55.1
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 5.0e-56 222.2 220 53.2
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.5e-55 219.9 202 58.4
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 6.1e-54 215.3 215 55.3
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.3e-51 207.6 251 39.8
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 2.2e-51 206.8 285 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.8e-50 203.8 252 43.3
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 2.7e-49 199.9 170 65.9
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 5.0e-48 195.7 130 70.8
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 9.5e-47 191.4 276 41.3
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 2.8e-46 189.9 122 71.3
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 2.8e-43 179.9 197 48.2
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 8.3e-43 178.3 292 39.4
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.7e-40 170.6 109 72.5
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 7.3e-39 165.2 114 67.5
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 6.1e-38 162.2 202 47.0
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.6e-33 147.5 301 33.6
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.1e-30 137.1 88 73.9
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-29 134.4 103 62.1
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 2.9e-27 126.7 218 39.9
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 5.4e-26 122.5 200 42.5
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 5.4e-18 95.9 315 31.1
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.2e-17 94.7 130 40.0
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.6e-17 94.4 215 30.7
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 4.3e-07 59.7 85 56.5


User provided reference genes

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