Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1012900 Malus domestica HOM05D003957 ORTHO05D004833 4.1e-231 804.3 383 100.0
MD02G1308500 Malus domestica HOM05D003957 ORTHO05D004833 1.2e-219 766.1 383 94.5
Prupe.2G015300 Prunus persica HOM05D003957 ORTHO05D004833 1.4e-215 752.7 383 93.2
RcHm_v2.0_Chr1g0316511 Rosa chinensis HOM05D003957 ORTHO05D004833 3.5e-198 694.9 373 86.1
FvH4_7g01180 Fragaria vesca HOM05D003957 ORTHO05D004833 4.7e-195 684.5 373 85.5
FAN03G2622 Fragaria x ananassa HOM05D003957 ORTHO05D004833 1.9e-188 662.5 373 83.9
FAN10G3195 Fragaria x ananassa HOM05D003957 ORTHO05D004833 4.3e-188 661.4 373 83.6
FAN06G1255 Fragaria x ananassa HOM05D003957 ORTHO05D004833 9.5e-188 660.2 373 83.6
Cfa010778 Carpinus fangiana HOM05D003957 ORTHO05D004833 8.9e-186 653.7 370 81.4
CiPaw.14G000800 Carya illinoinensis HOM05D003957 ORTHO05D004833 5.8e-185 651.0 366 82.5
Dinv09346 Davidia involucrata HOM05D003957 ORTHO05D004833 3.2e-183 645.2 370 80.5
Eucgr.J01212 Eucalyptus grandis HOM05D003957 ORTHO05D004833 5.4e-183 644.4 370 81.1
Actinidia20662 Actinidia chinensis HOM05D003957 ORTHO05D004833 2.7e-182 642.1 372 80.9
CsaV3_3G032090 Cucumis sativus L. HOM05D003957 ORTHO05D004833 1.0e-181 640.2 363 79.9
Ca_19580_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.3e-181 639.0 364 81.0
MELO3C023982.2 Cucumis melo HOM05D003957 ORTHO05D004833 3.9e-181 638.3 363 79.9
Oeu014587.1 Olea europaea HOM05D003957 ORTHO05D004833 5.1e-181 637.9 372 78.2
ClCG10G012310 Citrullus lanatus HOM05D003957 ORTHO05D004833 1.9e-180 636.0 363 79.9
Atru.chr11.2608 Acer truncatum HOM05D003957 ORTHO05D004833 1.2e-179 633.3 371 78.7
Cpa.g.sc125.12 Carica papaya HOM05D003957 ORTHO05D004833 3.6e-179 631.7 371 80.3
CSS0035789 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.8e-178 629.4 367 79.8
TPR.G3690 Trifolium pratense HOM05D003957 ORTHO05D004833 1.8e-178 629.4 364 79.7
Thecc.01G409500 Theobroma cacao HOM05D003957 ORTHO05D004833 3.1e-178 628.6 371 80.3
arahy.Tifrunner.gnm1.ann1.MG259H Arachis hypogaea HOM05D003957 ORTHO05D004833 5.2e-178 627.9 366 79.0
Lj3g0013934 Lotus japonicus HOM05D003957 ORTHO05D004833 1.5e-177 626.3 364 79.4
Lalb_Chr25g0282971 Lupinus albus HOM05D003957 ORTHO05D004833 3.4e-177 625.2 366 78.4
Sed0014830 Sechium edule HOM05D003957 ORTHO05D004833 7.6e-177 624.0 364 78.3
CiPaw.13G005800 Carya illinoinensis HOM05D003957 ORTHO05D004833 1.3e-176 623.2 370 79.5
Medtr4g037515 Medicago truncatula HOM05D003957 ORTHO05D004833 1.7e-176 622.9 381 76.9
Cc07_g18910 Coffea canephora HOM05D003957 ORTHO05D004833 2.2e-176 622.5 370 76.5
Phvul.011G009800 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 2.9e-176 622.1 364 78.0
arahy.Tifrunner.gnm1.ann1.X54W53 Arachis hypogaea HOM05D003957 ORTHO05D004833 6.4e-176 620.9 366 78.7
CANSAT80G0271 Cannabis sativa HOM05D003957 ORTHO05D004833 6.4e-176 620.9 374 77.8
Glyma.08G090300 Glycine max HOM05D003957 ORTHO05D004833 1.4e-175 619.8 364 78.3
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 5.4e-175 617.8 371 78.2
PGR044G1355 Punica granatum HOM05D003957 ORTHO05D004833 1.2e-174 616.7 371 77.9
Ciclev10031578m.g Citrus clementina HOM05D003957 ORTHO05D004833 1.6e-174 616.3 372 76.9
Rhsim01G0129100 Rhododendron simsii HOM05D003957 ORTHO05D004833 3.5e-174 615.1 367 77.7
Gohir.D08G164700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 4.6e-174 614.8 374 77.3
Psat5g208720 Pisum sativum HOM05D003957 ORTHO05D004833 6.0e-174 614.4 363 78.0
Gohir.A08G143700 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.0e-173 613.6 374 77.8
GSVIVG01032128001 Vitis vinifera HOM05D003957 ORTHO05D004833 8.7e-173 610.5 366 76.8
MSTRG.20577 Avicennia marina HOM05D003957 ORTHO05D004833 1.9e-172 609.4 372 76.1
Peaxi162Scf00953g00417 Petunia axillaris HOM05D003957 ORTHO05D004833 2.5e-172 609.0 370 75.7
TWI73G1181 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.3e-172 608.6 366 77.3
Manes.10G140900 Manihot esculenta HOM05D003957 ORTHO05D004833 5.6e-172 607.8 371 76.3
VMungo1080G1779 Vigna mungo HOM05D003957 ORTHO05D004833 1.6e-171 606.3 363 76.3
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 2.8e-171 605.5 360 78.3
Sed0012226 Sechium edule HOM05D003957 ORTHO05D004833 2.8e-171 605.5 363 76.3
Glyma.10G089600 Glycine max HOM05D003957 ORTHO05D004833 4.8e-171 604.7 364 76.4
COL.COLO4_04863 Corchorus olitorius HOM05D003957 ORTHO05D004833 8.1e-171 604.0 371 76.8
Sopen01g034340 Solanum pennellii HOM05D003957 ORTHO05D004833 1.1e-170 603.6 367 76.6
Solyc01g087300.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 1.4e-170 603.2 367 76.6
Lj3g0028128 Lotus japonicus HOM05D003957 ORTHO05D004833 1.8e-170 602.8 363 77.1
TWI09G1258 Tripterygium wilfordii HOM05D003957 ORTHO05D004833 3.1e-170 602.1 365 76.4
TPR.G35301 Trifolium pratense HOM05D003957 ORTHO05D004833 5.3e-170 601.3 363 75.8
Sopen01g034330 Solanum pennellii HOM05D003957 ORTHO05D004833 1.2e-169 600.1 370 75.7
CAN.G219.36 Capsicum annuum HOM05D003957 ORTHO05D004833 1.5e-169 599.7 370 75.7
Phvul.005G024600 Phaseolus vulgaris HOM05D003957 ORTHO05D004833 3.4e-169 598.6 363 75.8
VMungo1127G1153 Vigna mungo HOM05D003957 ORTHO05D004833 3.4e-169 598.6 406 70.0
Solyc01g087290.3 Solanum lycopersicum HOM05D003957 ORTHO05D004833 5.8e-169 597.8 370 75.4
PGSC0003DMG400006795 Solanum tuberosum HOM05D003957 ORTHO05D004833 5.8e-169 597.8 370 75.7
Medtr3g030890 Medicago truncatula HOM05D003957 ORTHO05D004833 7.6e-169 597.4 363 75.8
arahy.Tifrunner.gnm1.ann1.N7MVRX Arachis hypogaea HOM05D003957 ORTHO05D004833 9.9e-169 597.0 363 76.3
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 9.9e-169 597.0 373 74.5
Hund21483 Selenicereus undatus HOM05D003957 ORTHO05D004833 9.9e-169 597.0 373 75.1
THA.LOC104809852 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 9.9e-169 597.0 364 75.5
AUR62009393 Chenopodium quinoa HOM05D003957 ORTHO05D004833 3.8e-168 595.1 373 74.0
Potri.001G264900 Populus trichocarpa HOM05D003957 ORTHO05D004833 1.1e-167 593.6 369 75.3
SGA_v2.0_scaffold119G32740 Striga asiatica HOM05D003957 ORTHO05D004833 1.4e-167 593.2 373 74.0
SalBow5G3453 Salvia bowleyana HOM05D003957 ORTHO05D004833 2.4e-167 592.4 370 74.3
CAN.G219.37 Capsicum annuum HOM05D003957 ORTHO05D004833 7.1e-167 590.9 355 76.9
SalBow5G1725 Salvia bowleyana HOM05D003957 ORTHO05D004833 1.2e-166 590.1 370 74.1
QL04p008303 Quercus lobata HOM05D003957 ORTHO05D004833 1.6e-166 589.7 314 86.9
Gorai.004G171700 Gossypium raimondii HOM05D003957 ORTHO05D004833 6.0e-166 587.8 412 69.7
Sabra09G0044100 Salix brachista HOM05D003957 ORTHO05D004833 1.3e-165 586.6 369 74.0
Potri.009G059900 Populus trichocarpa HOM05D003957 ORTHO05D004833 5.1e-165 584.7 369 74.8
Nn2g15304 Nelumbo nucifera HOM05D003957 ORTHO05D004833 4.3e-164 581.6 369 73.7
AT5G47970 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 5.6e-164 581.3 366 73.2
Thhalv10004383m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 1.3e-163 580.1 361 74.0
AL8G20240 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 1.6e-163 579.7 360 74.2
C07p38840 Brassica napus HOM05D003957 ORTHO05D004833 1.6e-163 579.7 361 74.2
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.1e-163 579.3 371 73.0
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 2.1e-163 579.3 371 73.0
BolC7t44403H Brassica oleracea HOM05D003957 ORTHO05D004833 3.6e-163 578.6 361 73.4
Sp2g18450 Schrenkiella parvula HOM05D003957 ORTHO05D004833 4.8e-163 578.2 361 73.4
TAR623G1381 Trochodendron aralioides HOM05D003957 ORTHO05D004833 1.1e-162 577.0 365 74.2
A06p39430 Brassica napus HOM05D003957 ORTHO05D004833 1.4e-162 576.6 361 73.4
BraA06t26858Z Brassica rapa HOM05D003957 ORTHO05D004833 1.4e-162 576.6 361 73.4
ECA248G0218 Erigeron canadensis HOM05D003957 ORTHO05D004833 1.4e-162 576.6 375 73.6
CARHR184310 Cardamine hirsuta HOM05D003957 ORTHO05D004833 1.8e-162 576.2 361 73.4
Sabra16G0162800 Salix brachista HOM05D003957 ORTHO05D004833 2.4e-162 575.9 394 70.1
Carub.0008s0751 Capsella rubella HOM05D003957 ORTHO05D004833 9.0e-162 573.9 361 72.9
Migut.B01290 Erythranthe guttata HOM05D003957 ORTHO05D004833 9.0e-162 573.9 374 72.2
DCAR_003217 Daucus carota HOM05D003957 ORTHO05D004833 1.5e-161 573.2 375 71.5
BcaC06g30833 Brassica carinata HOM05D003957 ORTHO05D004833 4.9e-160 568.2 361 73.1
THA.LOC104817580 Tarenaya hassleriana HOM05D003957 ORTHO05D004833 6.4e-160 567.8 365 70.4
HanXRQChr01g0016501 Helianthus annuus HOM05D003957 ORTHO05D004833 1.9e-159 566.2 375 71.7
MBI02_g05667_MAGBIO Magnolia biondii HOM05D003957 ORTHO05D004833 2.4e-159 565.8 385 68.6
AT3G63510 Arabidopsis thaliana HOM05D003957 ORTHO05D004833 7.1e-159 564.3 365 71.0
AL5G46370 Arabidopsis lyrata HOM05D003957 ORTHO05D004833 1.3e-157 560.1 363 70.8
Sp5g26390 Schrenkiella parvula HOM05D003957 ORTHO05D004833 1.8e-157 559.7 365 69.3
PSO339G1767 Papaver somniferum HOM05D003957 ORTHO05D004833 3.9e-157 558.5 378 70.6
Thhalv10023495m.g Eutrema salsugineum HOM05D003957 ORTHO05D004833 6.7e-157 557.8 368 69.0
PSO384G3990 Papaver somniferum HOM05D003957 ORTHO05D004833 6.7e-157 557.8 377 70.0
ATR0332G004 Amborella trichopoda HOM05D003957 ORTHO05D004833 3.3e-156 555.4 368 70.1
BcaB03g14880 Brassica carinata HOM05D003957 ORTHO05D004833 1.4e-154 550.1 364 68.7
BraA07t31319Z Brassica rapa HOM05D003957 ORTHO05D004833 2.4e-154 549.3 365 68.8
AUR62023075 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.4e-154 549.3 407 65.4
AUR62043481 Chenopodium quinoa HOM05D003957 ORTHO05D004833 2.4e-154 549.3 407 65.4
Lsat_1_v5_gn_1_106241 Lactuca sativa HOM05D003957 ORTHO05D004833 6.9e-154 547.7 389 68.9
BcaC08g46558 Brassica carinata HOM05D003957 ORTHO05D004833 4.5e-153 545.0 365 67.9
BolC6t39590H Brassica oleracea HOM05D003957 ORTHO05D004833 4.5e-153 545.0 365 67.9
Aqoxy1G00278 Aquilegia oxysepala HOM05D003957 ORTHO05D004833 6.5e-152 541.2 383 65.8
A07p37580 Brassica napus HOM05D003957 ORTHO05D004833 1.2e-150 537.0 390 64.4
Aa31LG5G18360 Aethionema arabicum HOM05D003957 ORTHO05D004833 8.7e-149 530.8 365 66.6
C06p45340 Brassica napus HOM05D003957 ORTHO05D004833 1.5e-148 530.0 390 63.6
Os04g0278900 Oryza sativa ssp. japonica HOM05D003957 ORTHO05D004833 1.2e-145 520.4 352 67.9
Sc11g0009110 Simmondsia chinensis HOM05D003957 ORTHO05D004833 5.8e-145 518.1 322 74.8
arahy.Tifrunner.gnm1.ann1.74EFZ5 Arachis hypogaea HOM05D003957 ORTHO05D004833 3.9e-141 505.4 363 66.7
DCAR_029679 Daucus carota HOM05D003957 ORTHO05D004833 3.7e-139 498.8 325 71.1
Zm00001eb087020 Zea mays HOM05D003957 ORTHO05D004833 9.0e-138 494.2 326 69.3
SEGI_24417 Sequoiadendron giganteum HOM05D003957 ORTHO05D004833 1.2e-137 493.8 366 63.4
vmacro21189 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 7.2e-135 484.6 340 68.8
HPP92_026038 Vanilla planifolia HOM05D003957 ORTHO05D004833 6.7e-133 478.0 339 64.6
Psat7g196440 Pisum sativum HOM05D003957 ORTHO05D004833 3.1e-130 469.2 312 70.8
Lj7A573G28 Lonicera japonica HOM05D003957 ORTHO05D004833 4.5e-129 465.3 322 67.4
Mapoly0013s0118 Marchantia polymorpha HOM05D003957 ORTHO05D004833 1.4e-125 453.8 345 60.9
unitig_749.g14329 Utricularia gibba HOM05D003957 ORTHO05D004833 7.4e-124 448.0 365 59.7
Glyma.05G135100 Glycine max HOM05D003957 ORTHO05D004833 8.2e-123 444.5 243 85.6
Aa31LG10G17380 Aethionema arabicum HOM05D003957 ORTHO05D004833 7.0e-122 441.4 346 60.7
Pp3s97_50 Physcomitrium patens HOM05D003957 ORTHO05D004833 4.2e-119 432.2 365 57.0
Lalb_Chr01g0000361 Lupinus albus HOM05D003957 ORTHO05D004833 1.0e-112 411.0 253 75.1
SMO174G0131 Selaginella moellendorffii HOM05D003957 ORTHO05D004833 1.7e-112 410.2 357 54.1
Duzib138G0145 Durio zibethinus HOM05D003957 ORTHO05D004833 6.5e-112 408.3 366 58.5
Pp3c7_21950 Physcomitrium patens HOM05D003957 ORTHO05D004833 1.2e-105 387.5 382 51.0
AagrBONN_evm.TU.Sc2ySwM_117.3237 Anthoceros agrestis HOM05D003957 ORTHO05D004833 1.7e-104 383.6 287 62.0
CBR_g45512 Chara braunii HOM05D003957 ORTHO05D004833 8.5e-104 381.3 331 51.1
Carub.0005s3012 Capsella rubella HOM05D003957 ORTHO05D004833 6.3e-99 365.2 255 67.1
HPP92_013484 Vanilla planifolia HOM05D003957 ORTHO05D004833 9.2e-98 361.3 215 75.8
CARHR291460 Cardamine hirsuta HOM05D003957 ORTHO05D004833 4.4e-84 315.8 197 72.6
MCO14G372 Micromonas commoda HOM05D003957 ORTHO05D004833 2.9e-83 313.2 366 44.8
Oeu006567.1 Olea europaea HOM05D003957 ORTHO05D004833 7.0e-82 308.5 362 47.0
Aa31LG11G7420 Aethionema arabicum HOM05D003957 ORTHO05D004833 3.1e-69 266.5 152 81.6
Cre15.g636896 Chlamydomonas reinhardtii HOM05D003957 ORTHO05D004833 6.0e-65 252.3 563 29.1
FAN03G1487 Fragaria x ananassa HOM05D003957 ORTHO05D004833 2.8e-62 243.4 142 76.8
PRCOL_00006504 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 4.4e-60 236.1 340 37.9
PRCOL_00000364 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 8.7e-56 221.9 318 39.3
MCO15G235 Micromonas commoda HOM05D003957 ORTHO05D004833 1.7e-51 207.6 278 39.9
Aa31LG11G7410 Aethionema arabicum HOM05D003957 ORTHO05D004833 2.2e-51 207.2 146 61.6
CSS0043854 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 2.4e-45 187.2 133 62.4
Ah.00g001360 Amaranthus hybridus HOM05D003957 ORTHO05D004833 4.9e-43 179.5 148 54.7
HPP92_013483 Vanilla planifolia HOM05D003957 ORTHO05D004833 1.1e-37 161.8 136 52.9
unitig_749.g13713 Utricularia gibba HOM05D003957 ORTHO05D004833 6.5e-35 152.5 253 36.8
RcHm_v2.0_Chr1g0316481 Rosa chinensis HOM05D003957 ORTHO05D037444 8.7e-32 142.1 82 74.4
PRCOL_00003547 Prasinoderma coloniale HOM05D003957 ORTHO05D004833 2.5e-31 140.6 303 32.3
unitig_749.g13714 Utricularia gibba HOM05D003957 ORTHO05D004833 1.3e-30 138.3 101 67.3
CSS0024453 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 1.5e-28 131.3 74 82.4
arahy.Tifrunner.gnm1.ann1.2RNN62 Arachis hypogaea HOM05D000368 ORTHO05D000289 3.9e-24 116.7 66 80.3
CSS0028199 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 2.5e-23 114.0 78 67.9
Haze_03193 Corylus avellana HOM05D000309 ORTHO05D000008 3.3e-23 113.6 60 85.0
Sopen01g034450 Solanum pennellii HOM05D003957 ORTHO05D030633 2.2e-22 110.9 151 42.4
Prupe.2G015100 Prunus persica HOM05D002736 ORTHO05D003882 3.7e-22 110.2 59 86.4
vmacro21188 Vaccinium macrocarpon HOM05D003957 ORTHO05D004833 2.4e-21 107.5 77 61.0
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 4.1e-21 106.7 151 41.1
Ah.00g001340 Amaranthus hybridus HOM05D003957 ORTHO05D004833 3.2e-18 97.1 51 88.2
Cfa010780 Carpinus fangiana HOM05D003957 ORTHO05D004833 7.2e-18 95.9 49 85.7
Gorai.009G400700 Gossypium raimondii HOM05D003957 ORTHO05D004833 9.4e-18 95.5 50 86.0
Gohir.D13G107450 Gossypium hirsutum HOM05D003957 ORTHO05D004833 1.2e-17 95.1 82 59.8
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.6e-17 93.6 144 38.2
Gorai.007G239900 Gossypium raimondii HOM05D003957 ORTHO05D004833 4.6e-17 93.2 82 59.8
Lalb_Chr01g0000371 Lupinus albus HOM05D003957 ORTHO05D004833 6.1e-17 92.8 49 83.7
CSS0008275 Camellia sinensis var. sinensis HOM05D003957 ORTHO05D004833 3.9e-16 90.1 54 77.8
Gohir.D04G098500 Gossypium hirsutum HOM05D003957 ORTHO05D004833 5.1e-16 89.7 51 80.4
Cfa010787 Carpinus fangiana HOM05D003957 ORTHO05D004833 8.8e-16 89.0 64 71.9
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 1.1e-15 88.6 144 37.5
BolC6t39673H Brassica oleracea HOM05D003957 ORTHO05D004833 1.3e-14 85.1 69 60.9
Cre09.g387319 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D005503 1.1e-10 72.0 274 27.0
Sopen01g034430 Solanum pennellii HOM05D003957 ORTHO05D030633 9.4e-10 68.9 86 41.9
QL04p008294 Quercus lobata HOM05D003957 ORTHO05D037444 1.6e-09 68.2 54 59.3
Cre06.g284800 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D044119 3.0e-08 63.9 194 29.4
Cre10.g423400 Chlamydomonas reinhardtii HOM05D004284 ORTHO05D044199 3.9e-08 63.5 196 26.5
Pp3c13_19950 Physcomitrium patens HOM05D004633 ORTHO05D005503 5.2e-08 63.2 142 31.7
Thecc.09G345400 Theobroma cacao HOM05D003957 ORTHO05D037444 5.2e-08 63.2 53 56.6
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 2.2e-06 57.8 66 50.0


User provided reference genes

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