Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.7e-157 559.3 286 100.0
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 2.9e-125 452.2 284 84.5
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 5.6e-100 368.2 245 76.7
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.0e-93 347.4 244 74.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.3e-93 347.1 243 72.0
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.7e-93 346.7 242 72.3
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 8.6e-93 344.4 242 73.6
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 5.6e-92 341.7 242 72.3
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.6e-91 340.1 241 72.6
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 2.8e-91 339.3 245 71.4
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.7e-91 338.6 242 71.1
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.7e-91 338.6 242 71.1
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 3.1e-90 335.9 242 70.7
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 4.4e-89 332.0 242 70.2
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 5.8e-89 331.6 237 71.7
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 9.9e-89 330.9 245 70.6
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 9.9e-89 330.9 234 72.6
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.3e-88 330.5 242 69.4
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.3e-88 330.5 245 71.0
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.3e-88 330.5 242 69.4
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.7e-88 330.1 236 71.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.7e-88 330.1 245 69.8
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.9e-88 329.3 242 69.8
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.9e-88 329.3 235 72.3
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 6.4e-88 328.2 242 70.2
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.4e-87 327.0 242 70.2
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.9e-87 326.6 242 69.8
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 3.2e-87 325.9 237 72.2
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 5.4e-87 325.1 242 70.2
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.1e-87 324.7 234 71.4
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 9.3e-87 324.3 242 69.4
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 9.3e-87 324.3 242 69.0
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.2e-86 323.9 241 68.5
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.2e-86 323.9 242 69.4
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.1e-86 323.2 242 68.6
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 2.1e-86 323.2 242 69.8
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.5e-86 322.4 234 70.9
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 4.6e-86 322.0 242 68.6
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 6.0e-86 321.6 275 64.0
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.8e-86 321.2 234 71.4
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.8e-86 321.2 234 71.4
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.3e-85 320.5 241 69.3
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.7e-85 320.1 245 68.6
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 2.3e-85 319.7 241 68.0
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 3.9e-85 318.9 242 68.2
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 5.1e-85 318.5 241 67.6
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 5.1e-85 318.5 239 69.5
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.6e-85 318.2 240 66.7
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.5e-84 317.0 242 68.6
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.5e-84 317.0 242 68.2
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.3e-84 315.8 238 68.5
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.3e-84 315.8 238 68.5
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.3e-84 315.5 245 68.6
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 5.6e-84 315.1 242 66.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 5.6e-84 315.1 240 67.5
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 7.3e-84 314.7 240 66.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 9.6e-84 314.3 241 68.0
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 9.6e-84 314.3 235 67.7
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.6e-83 313.5 342 52.0
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.6e-83 313.5 242 68.6
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.2e-83 311.6 241 67.2
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.1e-82 310.8 242 63.6
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.8e-82 310.1 223 72.6
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.4e-82 309.7 345 52.2
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 3.1e-82 309.3 241 66.4
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 4.0e-82 308.9 238 66.8
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.5e-81 307.0 241 65.6
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 1.5e-81 307.0 250 63.2
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.0e-81 306.6 261 62.5
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 4.4e-81 305.4 243 65.4
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 5.8e-81 305.1 235 66.0
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 7.6e-81 304.7 242 66.5
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 2.9e-80 302.8 214 72.0
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 3.8e-80 302.4 241 64.3
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 8.4e-80 301.2 241 65.1
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.1e-79 300.8 233 66.1
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 5.4e-79 298.5 238 65.1
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 5.4e-79 298.5 233 65.2
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.7e-78 296.2 214 71.0
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 6.0e-78 295.0 241 64.7
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.7e-77 293.5 241 63.9
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.7e-77 293.5 241 63.9
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.7e-77 293.5 241 63.9
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.0e-77 292.7 267 60.3
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.9e-77 292.4 242 62.4
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.9e-77 292.4 242 63.6
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 5.1e-77 292.0 242 63.2
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.1e-76 290.8 225 67.6
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.1e-76 290.8 213 71.4
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.5e-76 289.7 240 61.2
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 5.6e-76 288.5 241 63.1
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 2.1e-75 286.6 245 61.6
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.6e-75 285.8 241 61.4
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 6.2e-75 285.0 241 61.0
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 8.1e-75 284.6 211 70.1
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.4e-74 283.9 234 63.2
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.3e-74 282.0 241 61.0
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 2.6e-73 279.6 241 61.8
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 2.9e-72 276.2 204 70.1
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 2.9e-72 276.2 246 63.8
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 8.4e-72 274.6 197 72.1
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.2e-70 270.8 285 54.0
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.1e-70 270.0 215 65.1
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 9.6e-68 261.2 242 58.3
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.4e-66 257.3 211 63.5
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 5.5e-63 245.4 145 78.6
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.0e-61 241.1 145 77.9
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.5e-60 237.3 145 77.2
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.9e-60 236.9 192 63.0
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 6.3e-59 231.9 241 54.4
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 1.1e-58 231.1 241 51.9
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 4.1e-58 229.2 230 54.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.9e-58 228.4 145 75.9
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 4.2e-55 219.2 135 77.0
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 4.3e-52 209.1 227 49.8
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 3.1e-50 203.0 125 78.4
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.5e-47 193.4 148 67.6
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.0e-40 171.4 232 41.8
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.9e-40 169.9 145 62.8
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.9e-40 169.9 145 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.1e-39 167.9 194 47.9
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 3.2e-39 166.4 152 57.9
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 2.0e-36 157.1 135 65.2
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 6.3e-35 152.1 125 68.8
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.0e-33 147.1 183 48.6
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.3e-32 144.4 127 61.4
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 3.8e-32 142.9 234 40.2
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 8.5e-32 141.7 133 57.9
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 9.4e-31 138.3 122 61.5
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 7.5e-28 128.6 68 86.8
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 9.7e-28 128.3 121 56.2
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.4e-26 123.6 152 40.8
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 5.3e-26 122.5 76 72.4
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.7e-25 118.6 106 60.4
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 3.0e-21 106.7 183 38.3
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.2e-21 105.9 130 50.8
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 1.2e-20 104.8 219 33.3
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 4.4e-20 102.8 167 46.7
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.7e-20 102.4 69 72.5
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.7e-19 100.9 51 88.2
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 4.8e-19 99.4 122 48.4
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 8.3e-19 98.6 71 66.2
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.7e-17 93.6 168 38.7
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.7e-17 92.0 122 49.2
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 7.2e-15 85.5 190 33.2
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.2e-15 85.5 50 76.0
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.2e-14 84.7 54 74.1
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.8e-14 83.6 102 52.9
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 8.0e-14 82.0 87 51.7
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.4e-10 71.2 50 70.0
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 7.8e-09 65.5 36 83.3
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 7.3e-07 58.9 33 72.7


User provided reference genes

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