Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1069600 Malus domestica HOM05D000228 ORTHO05D006129 1.2e-29 132.5 65 100.0
MD04G1068800 Malus domestica HOM05D000228 ORTHO05D006129 1.5e-21 105.5 52 94.2
Prupe.5G089300 Prunus persica HOM05D000228 ORTHO05D006129 5.7e-16 87.0 52 69.2
TWI60G0610 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 8.2e-15 83.2 52 67.3
Cfa012094 Carpinus fangiana HOM05D000228 ORTHO05D006129 9.0e-14 79.7 52 63.5
TWI15G0190 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 1.2e-13 79.3 52 63.5
Sed0014462 Sechium edule HOM05D000228 ORTHO05D006129 2.0e-13 78.6 52 65.4
ClCG00G000380 Citrullus lanatus HOM05D000228 ORTHO05D006129 2.6e-13 78.2 50 70.0
ClCG00G005990 Citrullus lanatus HOM05D000228 ORTHO05D006129 2.6e-13 78.2 50 70.0
ClCG10G003630 Citrullus lanatus HOM05D000228 ORTHO05D006129 2.6e-13 78.2 50 70.0
CsaV3_3G003630 Cucumis sativus L. HOM05D000228 ORTHO05D006129 4.5e-13 77.4 52 65.4
PGR031G2544 Punica granatum HOM05D000228 ORTHO05D006129 4.5e-13 77.4 51 66.7
TAR636G0238 Trochodendron aralioides HOM05D000228 ORTHO05D006129 7.6e-13 76.6 52 61.5
Cpa.g.sc29.15 Carica papaya HOM05D000228 ORTHO05D006129 1.0e-12 76.3 49 65.3
Eucgr.D01929 Eucalyptus grandis HOM05D000228 ORTHO05D006129 1.0e-12 76.3 52 63.5
QL12p017019 Quercus lobata HOM05D000228 ORTHO05D006129 1.0e-12 76.3 52 61.5
QL05p069269 Quercus lobata HOM05D000228 ORTHO05D006129 1.3e-12 75.9 53 60.4
arahy.Tifrunner.gnm1.ann1.RU3ERW Arachis hypogaea HOM05D000228 ORTHO05D006129 2.2e-12 75.1 52 61.5
arahy.Tifrunner.gnm1.ann1.WX3P41 Arachis hypogaea HOM05D000228 ORTHO05D006129 2.2e-12 75.1 52 61.5
CiPaw.12G099200 Carya illinoinensis HOM05D000228 ORTHO05D006129 2.2e-12 75.1 52 57.7
Nn6g34281 Nelumbo nucifera HOM05D000228 ORTHO05D006129 2.9e-12 74.7 52 59.6
CARHR048620 Cardamine hirsuta HOM05D000228 ORTHO05D006129 3.8e-12 74.3 52 63.5
FAN04G1469 Fragaria x ananassa HOM05D000228 ORTHO05D006129 3.8e-12 74.3 51 60.8
Psat2g181400 Pisum sativum HOM05D000228 ORTHO05D006129 3.8e-12 74.3 54 57.4
CANSAT21G2272 Cannabis sativa HOM05D000228 ORTHO05D006129 5.0e-12 73.9 51 62.7
Medtr5g011000 Medicago truncatula HOM05D000228 ORTHO05D006129 5.0e-12 73.9 54 57.4
Sp2g01560 Schrenkiella parvula HOM05D000228 ORTHO05D006129 5.0e-12 73.9 52 63.5
THA.LOC104809424 Tarenaya hassleriana HOM05D000228 ORTHO05D006129 5.0e-12 73.9 51 60.8
BcaC02g10404 Brassica carinata HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
BcaC04g22731 Brassica carinata HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
BcaC06g31930 Brassica carinata HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
A03p68370 Brassica napus HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
A09p13380 Brassica napus HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
C04p29320 Brassica napus HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
C09p15860 Brassica napus HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
BolC4t24462H Brassica oleracea HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
BraA01t02634Z Brassica rapa HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
BraA09t36984Z Brassica rapa HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 62.7
FvH4_5g01400 Fragaria vesca HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 60.8
FAN08G3600 Fragaria x ananassa HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 60.8
FAN13G2476 Fragaria x ananassa HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 60.8
FAN18G2520 Fragaria x ananassa HOM05D000228 ORTHO05D006129 6.5e-12 73.6 51 60.8
AL2G12580 Arabidopsis lyrata HOM05D000228 ORTHO05D006129 8.4e-12 73.2 52 61.5
Gohir.A08G178200 Gossypium hirsutum HOM05D000228 ORTHO05D006129 8.4e-12 73.2 54 57.4
Gohir.D08G196600 Gossypium hirsutum HOM05D000228 ORTHO05D006129 8.4e-12 73.2 54 57.4
Gorai.004G207300 Gossypium raimondii HOM05D000228 ORTHO05D006129 8.4e-12 73.2 54 57.4
MBI12_g02094_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D006129 8.4e-12 73.2 52 59.6
Peaxi162Scf00620g00924 Petunia axillaris HOM05D000228 ORTHO05D006129 8.4e-12 73.2 53 62.3
RcHm_v2.0_Chr7g0199481 Rosa chinensis HOM05D000228 ORTHO05D006129 8.4e-12 73.2 50 62.0
Atru.chr9.1533 Acer truncatum HOM05D000228 ORTHO05D006129 1.1e-11 72.8 50 60.0
DCAR_008426 Daucus carota HOM05D000228 ORTHO05D006129 1.1e-11 72.8 51 58.8
SHI01912 Sapria himalayana HOM05D000228 ORTHO05D006129 1.1e-11 72.8 53 62.3
Dinv37697 Davidia involucrata HOM05D000228 ORTHO05D006129 1.4e-11 72.4 51 58.8
Thhalv10023214m.g Eutrema salsugineum HOM05D000228 ORTHO05D006129 1.4e-11 72.4 51 62.7
Potri.001G111300 Populus trichocarpa HOM05D000228 ORTHO05D006129 1.9e-11 72.0 52 59.6
Sabra01G0084800 Salix brachista HOM05D000228 ORTHO05D006129 1.9e-11 72.0 52 59.6
Carub.0002s0198 Capsella rubella HOM05D000228 ORTHO05D006129 2.5e-11 71.6 52 57.7
Lsat_1_v5_gn_3_5900 Lactuca sativa HOM05D000228 ORTHO05D006129 2.5e-11 71.6 51 58.8
BolC9t54499H Brassica oleracea HOM05D000228 ORTHO05D006129 3.2e-11 71.2 51 60.8
Lj2g0010994 Lotus japonicus HOM05D000228 ORTHO05D006129 3.2e-11 71.2 54 57.4
Thecc.03G270300 Theobroma cacao HOM05D000228 ORTHO05D006129 3.2e-11 71.2 52 59.6
TPR.G33163 Trifolium pratense HOM05D000228 ORTHO05D006129 3.2e-11 71.2 54 53.7
TPR.G6660 Trifolium pratense HOM05D000228 ORTHO05D006129 3.2e-11 71.2 54 53.7
EL10Ac5g12720 Beta vulgaris HOM05D000228 ORTHO05D006129 4.2e-11 70.9 52 65.4
Gohir.D11G020900 Gossypium hirsutum HOM05D000228 ORTHO05D006129 5.5e-11 70.5 54 57.4
Gorai.007G022200 Gossypium raimondii HOM05D000228 ORTHO05D006129 5.5e-11 70.5 54 57.4
Lj8C239G8 Lonicera japonica HOM05D000228 ORTHO05D006129 5.5e-11 70.5 52 57.7
Lalb_Chr09g0324731 Lupinus albus HOM05D000228 ORTHO05D006129 5.5e-11 70.5 52 55.8
Hund11530 Selenicereus undatus HOM05D000228 ORTHO05D006129 5.5e-11 70.5 50 66.0
Nitab4.5_0001714g0190 Nicotiana tabacum HOM05D000228 ORTHO05D006129 7.2e-11 70.1 52 59.6
Aa31LG2G520 Aethionema arabicum HOM05D000228 ORTHO05D006129 9.3e-11 69.7 51 60.8
Cc08_g13910 Coffea canephora HOM05D000228 ORTHO05D006129 9.3e-11 69.7 52 53.8
DCAR_006765 Daucus carota HOM05D000228 ORTHO05D006129 9.3e-11 69.7 51 54.9
Dinv39017 Davidia involucrata HOM05D000228 ORTHO05D006129 9.3e-11 69.7 51 54.9
Sc01g0008810 Simmondsia chinensis HOM05D001804 ORTHO05D006129 1.2e-10 69.3 51 60.8
Sopen08g028570 Solanum pennellii HOM05D000228 ORTHO05D006129 1.2e-10 69.3 52 57.7
GSVIVG01019869001 Vitis vinifera HOM05D000228 ORTHO05D006129 1.2e-10 69.3 52 55.8
CAN.G981.46 Capsicum annuum HOM05D000228 ORTHO05D006129 1.6e-10 68.9 52 59.6
Glyma.11G026700 Glycine max HOM05D000228 ORTHO05D006129 2.1e-10 68.6 53 52.8
Nitab4.5_0007891g0030 Nicotiana tabacum HOM05D000228 ORTHO05D006129 2.1e-10 68.6 52 59.6
CAN.G981.44 Capsicum annuum HOM05D000228 ORTHO05D006129 2.7e-10 68.2 52 59.6
COL.COLO4_05280 Corchorus olitorius HOM05D000228 ORTHO05D006129 3.5e-10 67.8 52 55.8
HanXRQChr06g0165071 Helianthus annuus HOM05D000228 ORTHO05D006129 3.5e-10 67.8 51 56.9
Glyma.01G215700 Glycine max HOM05D000228 ORTHO05D006129 4.6e-10 67.4 52 53.8
Hma1.2p1_0138F.1_g062630 Hydrangea macrophylla HOM05D000228 ORTHO05D006129 4.6e-10 67.4 51 54.9
Ciclev10018489m.g Citrus clementina HOM05D000228 ORTHO05D006129 6.1e-10 67.0 50 58.0
Migut.A00916 Erythranthe guttata HOM05D000228 ORTHO05D006129 6.1e-10 67.0 51 54.9
Rhsim07G0095300 Rhododendron simsii HOM05D000228 ORTHO05D006129 6.1e-10 67.0 52 51.9
SGA_v2.0_scaffold146G36222 Striga asiatica HOM05D000228 ORTHO05D006129 6.1e-10 67.0 51 58.8
Ca_06663_v3 Cicer arietinum L. HOM05D000228 ORTHO05D006129 7.9e-10 66.6 54 51.9
vmacro14006 Vaccinium macrocarpon HOM05D000228 ORTHO05D006129 7.9e-10 66.6 52 50.0
Ah.12g057750 Amaranthus hybridus HOM05D000228 ORTHO05D006129 1.3e-09 65.9 52 57.7
MELO3C014034.2 Cucumis melo HOM05D000228 ORTHO05D006129 1.3e-09 65.9 71 47.9
Lalb_Chr05g0225121 Lupinus albus HOM05D000228 ORTHO05D006129 1.3e-09 65.9 48 54.2
Oeu062351.1 Olea europaea HOM05D000228 ORTHO05D006129 1.3e-09 65.9 51 54.9
VMungo1215G3193 Vigna mungo HOM05D000228 ORTHO05D006129 1.3e-09 65.9 52 53.8
Lalb_Chr05g0214761 Lupinus albus HOM05D000228 ORTHO05D006129 1.8e-09 65.5 52 51.9
Lj2A197T62 Lonicera japonica HOM05D000228 ORTHO05D006129 2.3e-09 65.1 52 53.8
Aqoxy1G00844 Aquilegia oxysepala HOM05D000228 ORTHO05D006129 3.0e-09 64.7 52 55.8
ECA246G3981 Erigeron canadensis HOM05D000228 ORTHO05D006129 3.0e-09 64.7 51 51.0
CSS0022136 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D006129 5.1e-09 63.9 52 50.0
CDE11G1137 Ceratophyllum demersum HOM05D000228 ORTHO05D006129 6.7e-09 63.5 47 57.4
Manes.02G028200 Manihot esculenta HOM05D000228 ORTHO05D006129 6.7e-09 63.5 52 53.8
unitig_22.g5477 Utricularia gibba HOM05D000228 ORTHO05D006129 6.7e-09 63.5 45 60.0
Haze_08958 Corylus avellana HOM05D000228 ORTHO05D006129 8.7e-09 63.2 35 74.3
Phvul.002G153700 Phaseolus vulgaris HOM05D000228 ORTHO05D006129 8.7e-09 63.2 52 51.9
AUR62017301 Chenopodium quinoa HOM05D000228 ORTHO05D006129 1.1e-08 62.8 52 55.8
AT1G63020 Arabidopsis thaliana HOM05D000228 ORTHO05D006129 1.5e-08 62.4 47 57.4
PSO478G3868 Papaver somniferum HOM05D000228 ORTHO05D006129 1.5e-08 62.4 51 56.9
PSO782G2782 Papaver somniferum HOM05D000228 ORTHO05D006129 1.5e-08 62.4 51 56.9
MSTRG.25571 Avicennia marina HOM05D000228 ORTHO05D006129 2.5e-08 61.6 50 50.0
AUR62010662 Chenopodium quinoa HOM05D000228 ORTHO05D006129 4.3e-08 60.8 52 53.8
Os09g0555200 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 2.8e-07 58.2 51 49.0
ATR0757G070 Amborella trichopoda HOM05D000228 ORTHO05D006129 6.3e-07 57.0 50 52.0
PGSC0003DMG400022753 Solanum tuberosum HOM05D000228 ORTHO05D006129 6.3e-07 57.0 45 55.6
Os04g0572600 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D006129 1.1e-06 56.2 51 45.1


User provided reference genes

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