Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 0.0e+00 1419.4 700 100.0
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 4.0e-301 1037.7 713 73.5
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.0e-255 885.9 714 64.3
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.7e-251 872.8 714 63.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.1e-250 870.2 714 63.3
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.8e-248 862.8 710 63.2
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.7e-235 819.7 733 59.1
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.3e-232 809.3 676 63.6
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.4e-224 783.5 720 58.1
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 4.0e-224 781.9 720 57.9
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 9.8e-215 750.7 865 49.8
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.9e-214 749.2 707 54.7
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 7.5e-207 724.5 724 53.9
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 5.2e-200 701.8 696 52.6
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.5e-199 700.3 734 52.7
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.0e-199 699.9 728 51.8
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.6e-199 699.5 723 52.3
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 9.8e-199 697.6 723 51.3
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 7.1e-197 691.4 732 51.4
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 2.7e-196 689.5 712 52.0
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.7e-195 686.8 545 65.5
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.0e-195 686.0 719 52.9
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 4.3e-194 682.2 723 52.3
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 5.6e-194 681.8 545 65.5
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 9.5e-194 681.0 592 59.8
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 9.5e-194 681.0 716 52.5
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 3.1e-192 676.0 718 51.3
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 5.2e-192 675.2 726 52.1
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.2e-191 674.1 731 50.6
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 4.4e-191 672.2 746 50.0
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 7.6e-191 671.4 727 50.8
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.9e-187 659.1 727 50.9
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 8.6e-187 657.9 711 50.8
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.1e-186 657.5 711 50.6
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.9e-186 656.8 720 51.7
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 7.3e-186 654.8 726 50.3
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 3.6e-185 652.5 718 50.8
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 4.7e-185 652.1 707 52.2
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.2e-185 651.7 714 49.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 5.4e-181 638.6 710 50.1
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.1e-176 624.4 710 49.4
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.5e-175 620.5 742 47.7
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.6e-175 619.8 742 47.7
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 7.1e-173 611.7 625 52.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.2e-172 610.9 718 48.1
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.1e-172 610.1 714 47.6
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.5e-172 609.4 721 48.7
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 6.0e-172 608.6 755 46.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 7.9e-172 608.2 687 49.1
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.5e-170 603.2 684 49.3
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.3e-170 602.8 725 47.9
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 9.6e-170 601.3 676 49.0
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 9.6e-170 601.3 694 47.8
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.3e-169 600.9 701 48.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 4.0e-168 595.9 695 48.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.8e-167 592.0 695 47.2
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 8.4e-166 588.2 684 48.8
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 3.5e-164 582.8 687 47.2
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.3e-162 576.2 696 46.8
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.6e-162 575.5 704 46.2
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.6e-162 575.5 699 46.6
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.6e-161 573.9 698 46.7
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.1e-161 573.5 711 45.3
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.8e-161 573.2 699 46.5
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.7e-161 572.8 704 46.2
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.8e-160 570.5 703 46.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 9.0e-160 568.2 716 44.6
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 2.0e-159 567.0 701 45.4
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 7.6e-159 565.1 682 46.5
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.3e-158 564.3 519 58.6
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.2e-158 563.5 689 46.7
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 3.2e-157 559.7 707 45.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 4.6e-156 555.8 684 47.2
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.1e-153 547.0 745 42.4
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.1e-152 544.7 683 45.4
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 7.2e-149 531.9 701 44.5
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.6e-148 529.6 697 44.3
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 3.0e-147 526.6 705 43.4
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 3.0e-147 526.6 681 44.8
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 5.1e-147 525.8 686 44.2
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 3.3e-146 523.1 685 44.1
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 4.3e-146 522.7 722 43.1
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 4.3e-146 522.7 697 42.6
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 4.8e-145 519.2 686 43.4
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 3.2e-141 506.5 721 41.5
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 6.1e-140 502.3 706 42.1
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.4e-139 501.1 704 44.2
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.5e-138 497.7 735 41.1
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.6e-138 496.9 674 44.4
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.1e-136 491.5 724 41.0
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.4e-135 486.5 716 41.3
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 5.9e-135 485.7 422 57.1
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 5.2e-131 472.6 683 40.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 9.7e-130 468.4 421 54.4
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.8e-129 466.1 694 41.4
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 9.1e-128 461.8 467 53.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.2e-127 461.5 714 41.2
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 5.9e-127 459.1 706 41.5
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.8e-126 456.4 722 41.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.8e-126 456.4 705 41.1
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 8.5e-126 455.3 712 40.6
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 2.5e-125 453.8 502 50.2
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 7.2e-125 452.2 720 41.4
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.3e-121 441.4 673 39.4
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 3.8e-118 429.9 585 41.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 8.5e-118 428.7 673 38.3
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.9e-117 427.6 670 39.4
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.5e-117 427.2 703 37.1
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.0e-115 420.2 681 39.1
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 3.0e-115 420.2 407 56.5
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 4.7e-108 396.4 522 44.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 8.6e-102 375.6 711 33.6
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 4.4e-98 363.2 683 34.0
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 9.8e-98 362.1 688 36.0
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.3e-97 361.7 492 42.7
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 6.4e-97 359.4 363 55.4
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 4.6e-95 353.2 711 35.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.3e-94 351.7 375 49.6
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.1e-92 344.4 703 32.7
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.2e-80 303.9 303 51.8
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.3e-77 293.5 541 36.6
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 8.9e-75 285.8 725 28.6
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.1e-72 278.9 376 43.4
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.0e-71 273.1 402 40.8
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.0e-62 245.7 380 39.5
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.9e-62 243.8 807 25.2
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 8.7e-62 242.7 611 29.0
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.2e-57 228.0 175 62.9
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.6e-50 204.5 115 83.5
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 9.3e-48 196.1 115 81.7
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.8e-46 191.8 254 41.7
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.9e-46 190.7 241 46.9
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 4.0e-43 180.6 142 59.9
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.0e-43 179.5 756 23.4
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 2.2e-41 174.9 529 27.4
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 3.0e-38 164.5 484 29.3
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.0e-35 152.9 246 39.0
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.1e-32 146.0 241 36.9
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.2e-31 142.5 183 43.7
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.1e-27 127.9 96 60.4
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.9e-24 118.6 146 43.8
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.7e-23 114.8 325 31.4
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.7e-20 105.5 195 32.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.4e-19 102.4 194 34.0
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.5e-17 93.6 372 23.9
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.6e-13 81.6 145 35.9
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.6e-13 81.6 124 40.3
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 4.4e-13 80.9 204 33.3
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 5.7e-13 80.5 167 35.3
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.7e-12 79.0 59 57.6
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 9.1e-11 73.2 329 24.6
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.0e-09 69.7 177 27.7
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 1.3e-09 69.3 76 47.4
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.8e-09 67.8 61 54.1
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 3.8e-09 67.8 62 45.2
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.8e-09 67.8 81 48.1
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.5e-08 65.9 137 37.2
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 4.2e-08 64.3 57 49.1
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 3.6e-07 61.2 59 52.5
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 1.0e-06 59.7 113 28.3
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 5.2e-06 57.4 59 50.8
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 8.8e-06 56.6 72 37.5


User provided reference genes

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