Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 0.0e+00 1339.3 723 100.0
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 0.0e+00 1261.1 727 94.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 0.0e+00 1172.5 724 85.9
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 0.0e+00 1101.7 728 79.3
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 0.0e+00 1078.9 724 79.8
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 4.9e-312 1073.5 730 77.5
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 1.9e-309 1065.4 733 77.1
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 1.1e-306 1056.2 729 77.4
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 1.6e-305 1052.4 714 76.8
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 1.6e-305 1052.4 781 73.0
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 8.1e-305 1050.0 733 77.9
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 1.5e-303 1045.8 730 75.8
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 7.6e-303 1043.5 724 80.2
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 9.9e-303 1043.1 724 80.4
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.7e-302 1042.3 716 76.7
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.4e-301 1039.3 732 75.8
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.4e-301 1038.5 733 76.7
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 2.7e-300 1035.0 730 76.6
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 4.6e-300 1034.2 735 75.8
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 4.6e-300 1034.2 725 75.2
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 3.0e-299 1031.6 715 77.8
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.5e-298 1028.5 722 74.4
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 4.3e-298 1027.7 718 76.7
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 1.2e-297 1026.2 696 77.7
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 6.2e-297 1023.8 714 75.9
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.4e-296 1022.7 717 75.7
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.8e-296 1022.3 732 76.0
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 8.9e-296 1020.0 737 75.2
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 2.0e-295 1018.8 717 75.5
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 2.6e-295 1018.5 717 78.7
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 3.4e-295 1018.1 739 74.0
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.4e-293 1012.7 724 78.5
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 3.2e-293 1011.5 680 77.5
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 7.3e-290 1000.3 728 73.9
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 9.6e-290 1000.0 716 74.6
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 9.6e-290 1000.0 726 75.1
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 6.2e-289 997.3 749 72.6
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 4.0e-288 994.6 728 73.5
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.3e-288 994.2 728 73.6
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 6.9e-288 993.8 727 74.0
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 2.0e-287 992.3 735 73.3
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 2.6e-287 991.9 722 73.4
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.1e-285 986.5 727 71.3
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.4e-285 986.1 737 73.1
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.4e-285 986.1 689 76.1
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.2e-284 983.0 685 77.1
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 4.6e-284 981.1 737 71.5
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 1.0e-283 979.9 723 74.8
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 3.9e-283 978.0 799 69.3
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 1.9e-282 975.7 755 70.1
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 3.6e-281 971.5 729 72.7
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 3.1e-280 968.4 744 71.0
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 4.0e-280 968.0 723 72.6
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 4.0e-280 968.0 629 80.1
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 1.3e-278 963.0 764 68.6
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 2.9e-278 961.8 715 73.3
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 1.4e-277 959.5 722 72.7
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 5.5e-277 957.6 710 70.6
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 5.5e-277 957.6 726 73.1
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.3e-277 956.8 711 73.3
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 7.9e-276 953.7 729 71.1
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.0e-275 953.4 606 81.5
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 1.3e-275 953.0 753 68.9
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 2.3e-275 952.2 669 77.3
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 3.3e-274 948.3 723 72.3
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 4.3e-274 948.0 751 68.8
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 6.2e-273 944.1 702 74.2
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 9.0e-272 940.3 722 72.6
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 1.2e-271 939.9 723 72.1
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 2.9e-270 935.3 548 82.8
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.6e-268 929.5 731 70.9
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 4.6e-268 927.9 669 73.5
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 6.0e-268 927.5 508 87.0
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 6.0e-268 927.5 693 68.8
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 1.8e-267 926.0 654 76.3
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 3.0e-267 925.2 671 72.1
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 3.9e-267 924.9 726 71.6
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 6.7e-267 924.1 653 76.3
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 4.8e-265 917.9 723 66.5
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.5e-263 912.9 734 69.5
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 4.5e-263 911.4 740 69.6
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-261 906.4 504 86.3
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 3.2e-261 905.2 721 65.0
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.0e-259 900.2 674 72.4
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.9e-258 896.0 721 65.2
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 4.3e-258 894.8 621 75.4
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 6.9e-256 887.5 647 75.1
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 7.7e-255 884.0 724 71.7
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 2.2e-254 882.5 722 65.8
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 3.2e-253 878.6 725 65.2
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.8e-248 862.8 742 66.3
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.2e-244 850.1 476 84.9
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.7e-243 844.3 730 69.3
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.7e-241 839.7 798 59.1
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.0e-230 803.9 607 68.5
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 8.0e-228 794.3 625 69.9
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 4.4e-218 761.9 721 60.1
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.4e-216 756.9 693 58.3
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 1.8e-216 756.5 538 68.4
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 6.2e-204 714.9 507 68.2
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.6e-194 682.9 402 81.8
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 4.4e-186 655.6 345 90.1
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 2.4e-179 633.3 544 57.2
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 3.2e-176 622.9 693 55.6
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 4.8e-172 609.0 470 61.7
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.5e-170 604.0 522 57.3
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 7.4e-165 585.1 360 78.6
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 9.9e-162 574.7 549 62.1
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.8e-155 553.9 541 61.2
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 4.1e-131 473.0 544 46.9
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 3.0e-126 456.8 508 53.5
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 5.7e-125 452.6 563 44.8
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.5e-117 427.9 255 77.6
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 2.2e-113 414.1 536 45.0
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.4e-102 378.3 517 40.8
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.9e-98 362.8 214 81.8
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 1.6e-95 354.8 377 61.3
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 1.3e-89 335.1 176 89.2
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 3.4e-85 320.5 263 63.5
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.5e-69 268.5 156 78.8
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 9.2e-67 259.2 362 52.8
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-56 225.3 163 68.1
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.9e-53 212.6 307 45.6
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 3.7e-47 194.1 240 58.8
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.8e-47 193.7 276 54.0
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.0e-42 176.8 97 85.6
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.3e-40 171.0 293 43.3
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.8e-31 141.4 96 75.0
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.5e-24 119.0 76 81.6
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 4.5e-21 107.5 223 45.7
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.2e-18 99.4 113 51.3
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.2e-10 72.8 200 43.5
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-10 72.4 268 30.6
Sopen00g012230 Solanum pennellii HOM05D005363 ORTHO05D006607 2.0e-08 65.5 79 59.5
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.1e-06 58.2 142 35.2
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 4.1e-06 57.8 142 35.2
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 9.1e-06 56.6 59 57.6


User provided reference genes

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