Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 0.0e+00 1335.1 674 100.0
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 8.3e-296 1020.0 676 78.6
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 5.8e-281 970.7 672 74.6
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.9e-272 941.8 672 72.5
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.3e-271 936.8 672 72.2
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.3e-268 928.3 693 70.1
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 9.6e-268 926.8 675 70.2
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.4e-263 912.9 678 69.9
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.9e-261 904.8 724 66.3
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 7.4e-260 900.6 672 68.5
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 3.1e-258 895.2 675 69.0
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 7.4e-252 874.0 673 67.0
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 8.2e-251 870.5 676 66.4
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 4.1e-250 868.2 675 66.8
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 6.9e-250 867.5 708 63.7
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 1.7e-248 862.8 678 65.6
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 2.5e-247 859.0 678 65.8
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 7.9e-246 854.0 684 65.9
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 3.9e-245 851.7 675 64.4
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 6.7e-245 850.9 676 63.8
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 7.4e-244 847.4 675 66.1
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.7e-243 846.3 674 64.5
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 8.2e-243 844.0 675 65.2
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 8.2e-243 844.0 672 65.9
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.1e-242 843.6 714 62.6
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.4e-237 826.6 672 63.8
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.3e-235 820.1 667 64.6
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 6.3e-235 817.8 691 63.2
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 5.3e-234 814.7 673 62.4
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 2.0e-233 812.8 673 62.9
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.3e-232 810.1 702 61.4
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 7.2e-231 804.3 677 63.1
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 9.4e-231 803.9 673 62.7
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.2e-230 803.5 673 61.4
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 9.7e-228 793.9 681 62.0
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.3e-227 793.5 674 61.1
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.5e-223 780.0 697 60.3
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 3.6e-222 775.4 672 61.6
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 4.4e-220 768.5 676 59.2
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.7e-219 766.5 706 58.9
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.4e-218 763.5 603 65.8
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 2.9e-216 755.7 701 58.3
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 8.5e-216 754.2 836 52.8
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 4.4e-212 741.9 642 61.5
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.3e-211 740.3 616 62.0
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 1.3e-211 740.3 678 60.5
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 3.7e-211 738.8 684 57.9
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 4.8e-211 738.4 681 58.3
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 1.1e-210 737.3 704 56.2
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.8e-210 736.5 680 59.9
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 4.1e-210 735.3 690 58.0
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 3.3e-207 725.7 670 59.1
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 2.1e-206 723.0 679 57.6
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.8e-205 719.9 672 57.7
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 4.0e-205 718.8 693 56.7
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 8.9e-205 717.6 744 53.4
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 1.5e-204 716.8 674 56.8
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.0e-204 716.5 682 56.5
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 4.4e-204 715.3 678 56.3
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 4.4e-204 715.3 674 56.8
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 1.7e-203 713.4 663 58.5
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 6.3e-203 711.4 676 56.8
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 6.3e-203 711.4 676 56.8
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 6.3e-203 711.4 676 56.8
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 1.3e-200 703.7 686 55.1
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 1.5e-199 700.3 675 56.9
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.9e-199 699.9 596 64.8
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 2.8e-198 696.0 688 56.1
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 1.3e-187 660.6 672 55.4
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.4e-186 656.4 692 54.2
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 3.5e-185 652.5 606 59.6
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.1e-182 643.3 667 52.5
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 4.4e-180 635.6 681 51.8
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 9.2e-178 627.9 671 51.4
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 6.6e-176 621.7 603 56.7
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 2.5e-175 619.8 677 52.4
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.1e-174 616.7 585 58.1
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.4e-173 614.0 531 61.4
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.7e-171 607.1 583 59.5
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 9.2e-170 601.3 672 48.7
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 1.5e-167 594.0 671 49.6
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 1.5e-167 594.0 673 50.8
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-167 593.6 599 56.6
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 5.6e-167 592.0 669 50.8
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.4e-165 587.4 671 51.0
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.6e-161 573.9 667 48.3
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 6.6e-160 568.5 683 48.0
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 1.3e-158 564.3 649 49.3
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.8e-157 560.5 685 48.3
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 4.5e-156 555.8 505 58.2
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 8.4e-155 551.6 506 57.1
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.3e-151 539.3 668 46.7
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.3e-142 511.1 531 53.3
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 9.7e-135 485.0 461 56.6
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 6.3e-126 455.7 656 44.8
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.1e-125 454.9 679 40.9
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 7.7e-124 448.7 769 40.1
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 8.5e-123 445.3 684 39.0
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 4.5e-116 422.9 680 39.1
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.9e-114 417.5 563 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 2.7e-113 413.7 678 37.6
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 9.7e-103 378.6 462 46.3
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.4e-101 374.8 271 70.8
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 7.7e-100 369.0 563 42.3
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.9e-91 340.5 224 75.9
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 3.3e-90 337.0 521 40.7
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 9.5e-90 335.5 224 73.2
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 8.0e-89 332.4 462 45.7
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.9e-82 311.2 425 45.2
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 3.6e-81 307.0 277 58.5
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 9.8e-79 298.9 916 28.5
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 3.9e-75 287.0 310 53.5
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 3.4e-63 247.3 171 73.1
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.9e-62 244.2 151 80.1
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.6e-60 238.4 167 71.9
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 2.5e-58 231.1 164 73.2
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 7.6e-55 219.5 135 80.7
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 9.9e-55 219.2 146 76.0
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.6e-52 210.3 174 62.6
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 2.3e-51 208.0 176 66.5
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 3.6e-49 200.7 166 64.5
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 3.1e-48 197.6 171 59.1
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 4.4e-47 193.7 370 37.8
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.6e-44 185.3 171 56.1
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.8e-41 174.5 143 61.5
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.4e-40 172.2 286 42.0
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 9.0e-40 169.5 105 78.1
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.9e-38 164.5 137 59.1
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.9e-37 161.8 101 74.3
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.2e-37 161.0 146 58.2
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 3.5e-36 157.5 123 63.4
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.0e-30 139.4 308 33.8
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 1.6e-28 132.1 252 33.7
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.6e-28 132.1 320 31.9
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 2.7e-28 131.3 151 51.7
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 8.7e-27 126.3 107 60.7
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 4.3e-26 124.0 116 56.0
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.6e-25 122.1 91 69.2
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.6e-25 122.1 106 58.5
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 5.8e-23 113.6 144 45.1
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 5.1e-19 100.5 207 35.3
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.5e-18 99.0 158 38.6
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.9e-18 98.6 55 81.8
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 3.7e-17 94.4 55 76.4
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 3.1e-16 91.3 53 81.1
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 2.0e-15 88.6 60 68.3
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 1.4e-13 82.4 86 54.7


User provided reference genes

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