Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1184900 Malus domestica HOM05D003261 ORTHO05D004230 5.5e-260 900.6 504 100.0
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 6.6e-96 355.5 208 84.1
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 9.5e-95 351.7 208 86.5
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 8.4e-91 338.6 209 80.4
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 5.4e-90 335.9 208 83.2
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 1.3e-88 331.3 209 78.5
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.3e-88 331.3 209 78.5
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.0e-88 330.1 209 78.0
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 6.6e-88 328.9 209 78.0
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 8.6e-88 328.6 209 78.5
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 2.7e-81 307.0 364 60.4
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 1.8e-77 294.3 389 53.7
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 9.9e-76 288.5 372 59.1
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 2.9e-75 287.0 214 70.1
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 1.0e-72 278.5 215 68.8
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.3e-72 278.1 212 69.3
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.3e-72 278.1 212 69.3
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 1.3e-72 278.1 213 66.7
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 3.9e-72 276.6 375 54.7
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 5.1e-72 276.2 215 68.4
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 1.5e-71 274.6 215 67.4
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 1.9e-71 274.2 215 67.0
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 1.9e-71 274.2 215 67.0
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 2.5e-71 273.9 215 67.9
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 5.6e-71 272.7 213 68.5
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 7.4e-71 272.3 212 65.1
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 7.4e-71 272.3 215 67.0
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 7.4e-71 272.3 215 67.4
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 9.6e-71 271.9 215 67.0
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 1.6e-70 271.2 215 67.4
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 3.7e-70 270.0 208 67.8
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 3.7e-70 270.0 215 67.4
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 8.1e-70 268.9 213 68.1
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 1.4e-69 268.1 214 66.4
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 2.4e-69 267.3 212 66.0
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 3.1e-69 266.9 220 63.6
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 3.1e-69 266.9 213 64.8
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 5.3e-69 266.2 225 63.1
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 9.0e-69 265.4 213 64.8
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 1.2e-68 265.0 208 65.9
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 1.2e-68 265.0 206 67.0
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 2.0e-68 264.2 216 62.0
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 2.6e-68 263.8 216 65.7
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 2.6e-68 263.8 214 62.6
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 2.6e-68 263.8 208 65.9
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 3.4e-68 263.5 213 66.2
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 4.5e-68 263.1 215 64.2
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 4.5e-68 263.1 212 66.5
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 5.8e-68 262.7 208 66.3
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 5.8e-68 262.7 216 62.0
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 7.6e-68 262.3 216 62.5
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 7.6e-68 262.3 215 66.5
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 9.9e-68 261.9 216 62.0
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 1.3e-67 261.5 212 61.8
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 1.7e-67 261.2 208 63.5
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 2.2e-67 260.8 218 60.6
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 2.2e-67 260.8 212 64.2
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 2.2e-67 260.8 217 64.1
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 8.4e-67 258.8 214 61.2
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 8.4e-67 258.8 216 62.0
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 1.4e-66 258.1 205 63.4
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 3.2e-66 256.9 214 63.6
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 4.2e-66 256.5 216 61.6
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 4.2e-66 256.5 216 61.6
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 4.2e-66 256.5 216 61.6
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 5.5e-66 256.1 216 61.6
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 7.1e-66 255.8 379 53.6
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 7.1e-66 255.8 209 65.1
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 2.1e-65 254.2 209 63.2
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 2.7e-65 253.8 206 63.6
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 2.7e-65 253.8 214 60.7
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 4.6e-65 253.1 208 64.4
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 6.0e-65 252.7 216 61.1
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 6.0e-65 252.7 215 62.3
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 1.3e-64 251.5 217 63.6
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.3e-64 251.5 220 62.7
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 1.5e-63 248.1 215 61.9
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 1.9e-63 247.7 209 61.2
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 7.4e-63 245.7 213 63.4
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 9.6e-63 245.4 208 62.0
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 9.6e-63 245.4 385 41.0
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.3e-62 245.0 212 60.8
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 2.8e-62 243.8 204 60.3
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 1.8e-61 241.1 229 56.8
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 5.3e-61 239.6 218 59.2
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 5.3e-61 239.6 211 60.2
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 6.9e-61 239.2 212 59.9
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 6.9e-61 239.2 211 59.7
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.2e-60 238.4 204 61.8
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 4.5e-60 236.5 214 57.9
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 4.5e-60 236.5 214 58.4
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 5.8e-60 236.1 209 58.4
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 1.3e-59 235.0 214 57.9
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 1.7e-59 234.6 216 61.1
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 3.8e-59 233.4 213 59.6
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 3.8e-59 233.4 204 59.8
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 3.8e-59 233.4 204 62.7
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 4.9e-59 233.0 211 57.8
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 6.5e-59 232.6 213 56.8
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 8.4e-59 232.3 204 60.3
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 8.4e-59 232.3 216 61.1
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 2.5e-58 230.7 213 55.4
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 5.5e-58 229.6 205 59.0
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 7.1e-58 229.2 222 59.5
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 1.2e-57 228.4 206 60.2
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 2.7e-57 227.3 207 57.5
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 7.9e-57 225.7 208 57.7
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.3e-56 224.2 213 61.5
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 3.0e-56 223.8 242 50.8
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 8.7e-56 222.2 204 58.3
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 3.3e-55 220.3 208 57.2
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 9.7e-55 218.8 200 57.0
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 2.2e-54 217.6 210 55.2
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 3.7e-54 216.9 223 52.0
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 1.2e-52 211.8 212 53.3
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.0e-52 211.1 215 58.1
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 2.6e-52 210.7 224 53.1
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 2.2e-51 207.6 212 52.8
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 1.0e-48 198.7 202 53.5
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 1.9e-47 194.5 182 57.7
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 4.8e-46 189.9 204 54.9
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 1.1e-45 188.7 200 54.0
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 6.5e-43 179.5 169 57.4
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 8.5e-43 179.1 364 50.0
MD05G1262800 Malus domestica HOM05D003261 ORTHO05D004230 1.1e-42 178.7 204 51.0
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 5.5e-42 176.4 221 46.2
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 7.2e-42 176.0 218 47.7
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 7.9e-41 172.6 206 47.6
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 1.1e-37 162.2 207 47.8
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 1.7e-35 154.8 218 41.7
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 1.9e-34 151.4 234 38.0
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 1.9e-34 151.4 92 73.9
SMO340G0096 Selaginella moellendorffii HOM05D003261 ORTHO05D010935 1.9e-34 151.4 204 44.1
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 3.2e-34 150.6 218 62.8
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 1.2e-33 148.7 251 39.4
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 1.2e-33 148.7 202 43.1
BcaC07g40009 Brassica carinata HOM05D000211 ORTHO05D004230 8.0e-33 146.0 200 45.5
CBR_g46444 Chara braunii HOM05D003261 ORTHO05D004230 1.5e-31 141.7 263 37.3
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 2.2e-30 137.9 82 74.4
PSO017G1819 Papaver somniferum HOM05D003261 ORTHO05D004230 2.8e-30 137.5 81 76.5
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 6.3e-30 136.3 169 48.5
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 1.8e-29 134.8 67 83.6
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 1.7e-27 128.3 219 62.6
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 1.7e-27 128.3 69 75.4
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 3.8e-27 127.1 233 36.5
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 1.9e-26 124.8 203 41.4
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 1.9e-26 124.8 86 60.5
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 9.4e-26 122.5 68 69.1
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 2.7e-25 120.9 65 78.5
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 1.2e-23 115.5 199 38.2
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 2.0e-23 114.8 59 86.4
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.0e-23 114.8 59 86.4
SpUn1161_0010 Schrenkiella parvula HOM05D003261 ORTHO05D027516 7.5e-23 112.8 116 53.4
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 9.7e-23 112.5 91 62.6
AL6G53110 Arabidopsis lyrata HOM05D000915 ORTHO05D001662 1.8e-21 108.2 105 53.3
FAN07G0835 Fragaria x ananassa HOM05D003261 ORTHO05D004230 2.4e-21 107.8 60 81.7
TPR.G20574 Trifolium pratense HOM05D003261 ORTHO05D004230 3.1e-21 107.5 60 75.0
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 9.1e-21 105.9 376 28.7
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 9.1e-21 105.9 376 28.7
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 2.0e-20 104.8 61 75.4
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 7.7e-20 102.8 187 38.5
Nitab4.5_0000593g0280 Nicotiana tabacum HOM05D003261 ORTHO05D285224 2.7e-17 94.4 66 68.2
Peaxi162Scf00321g00017 Petunia axillaris HOM05D003261 ORTHO05D014021 3.6e-17 94.0 197 42.1
ECA234G3327 Erigeron canadensis HOM05D003261 ORTHO05D018817 1.2e-15 89.0 70 64.3
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 2.0e-15 88.2 54 70.4
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 2.6e-15 87.8 49 71.4
Haze_27215 Corylus avellana HOM05D003261 ORTHO05D004230 3.4e-15 87.4 56 58.9
SHI00250 Sapria himalayana HOM05D003261 ORTHO05D018817 9.8e-15 85.9 50 80.0
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 9.8e-15 85.9 208 31.2
BolC8t50839H Brassica oleracea HOM05D003261 ORTHO05D018817 2.2e-14 84.7 64 64.1
BcaC08g43649 Brassica carinata HOM05D000171 ORTHO05D000101 4.8e-14 83.6 53 71.7
C06p10670 Brassica napus HOM05D000171 ORTHO05D000101 4.8e-14 83.6 53 71.7
HanXRQChr11g0341891 Helianthus annuus HOM05D003261 ORTHO05D024582 6.3e-14 83.2 52 67.3
Nitab4.5_0003111g0080 Nicotiana tabacum HOM05D003261 ORTHO05D004230 6.3e-14 83.2 41 90.2
Sp7g14310 Schrenkiella parvula HOM05D002510 ORTHO05D007210 7.0e-13 79.7 185 33.5
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 2.7e-12 77.8 45 71.1
HanXRQChr15g0490951 Helianthus annuus HOM05D003261 ORTHO05D004230 5.9e-12 76.6 41 78.0
Aqoxy3G03983 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 2.3e-11 74.7 50 64.0
SHI00252 Sapria himalayana HOM05D003769 ORTHO05D014021 2.3e-11 74.7 95 43.2
Gorai.007G268100 Gossypium raimondii HOM05D003261 ORTHO05D018817 1.5e-10 72.0 44 79.5
Haze_18316 Corylus avellana HOM05D003261 ORTHO05D014021 2.5e-10 71.2 115 37.4
COL.COLO4_28010 Corchorus olitorius HOM05D003261 ORTHO05D018817 7.2e-10 69.7 94 48.9
FAN17G2078 Fragaria x ananassa HOM05D003261 ORTHO05D014021 1.6e-09 68.6 34 88.2
Eucgr.H01421 Eucalyptus grandis HOM05D002800 ORTHO05D008563 1.4e-08 65.5 43 74.4
Gohir.D11G250150 Gossypium hirsutum HOM05D003261 ORTHO05D018817 2.3e-08 64.7 44 72.7
Peaxi162Scf00409g00039 Petunia axillaris HOM05D003261 ORTHO05D004230 1.2e-07 62.4 46 65.2
Medtr2g019400 Medicago truncatula HOM05D003261 ORTHO05D004230 3.4e-07 60.8 36 69.4


User provided reference genes

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