Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 0.0e+00 3265.3 1813 100.0
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 5.7e-97 360.9 1871 26.0
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 3.4e-94 351.7 1756 25.1
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 5.9e-94 350.9 1756 25.1
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.0e-93 350.1 1793 27.7
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 2.5e-92 345.5 1770 25.0
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 4.2e-92 344.7 1828 24.8
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 7.2e-92 344.0 1758 25.0
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 2.1e-91 342.4 1837 26.2
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 2.7e-91 342.0 1758 24.9
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 3.6e-91 341.7 1725 26.0
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 7.9e-91 340.5 1772 25.7
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 7.9e-91 340.5 1770 24.7
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 1.8e-90 339.3 1752 25.7
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 3.0e-90 338.6 1849 25.0
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 3.9e-90 338.2 1793 25.6
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 5.1e-90 337.8 1740 26.7
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 5.1e-90 337.8 1817 25.8
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 6.7e-90 337.4 1741 25.4
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 1.1e-89 336.7 1837 24.6
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 1.5e-89 336.3 1821 26.4
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 1.9e-89 335.9 1729 25.7
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 1.9e-89 335.9 1741 26.0
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 2.5e-89 335.5 1791 25.3
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 2.5e-89 335.5 1845 25.2
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 1.3e-88 333.2 1819 26.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 1.6e-88 332.8 1822 26.0
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 1.6e-88 332.8 1845 25.3
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 2.2e-88 332.4 1823 24.8
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.8e-88 332.0 1812 24.5
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 6.3e-88 330.9 1828 24.8
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 6.3e-88 330.9 1769 25.3
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 8.2e-88 330.5 1746 25.3
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 1.1e-87 330.1 1727 24.7
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 1.4e-87 329.7 1811 24.7
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 1.8e-87 329.3 1829 25.9
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 3.1e-87 328.6 1744 25.2
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 3.1e-87 328.6 1734 24.8
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 3.1e-87 328.6 1738 25.5
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 4.1e-87 328.2 1757 25.9
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 5.3e-87 327.8 1828 24.6
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 6.9e-87 327.4 1745 25.6
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 6.9e-87 327.4 1793 25.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 9.1e-87 327.0 1752 25.1
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 1.2e-86 326.6 1828 25.9
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 1.5e-86 326.2 1768 25.3
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 1.5e-86 326.2 1801 24.5
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 1.5e-86 326.2 1784 25.8
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 2.0e-86 325.9 1854 25.5
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 2.0e-86 325.9 1829 25.9
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 2.0e-86 325.9 1816 25.7
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 3.4e-86 325.1 1822 24.4
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 3.4e-86 325.1 1744 25.2
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 3.4e-86 325.1 1768 25.2
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 3.4e-86 325.1 1739 25.8
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 4.5e-86 324.7 1767 24.3
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 4.5e-86 324.7 1764 24.8
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 5.9e-86 324.3 1773 25.9
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 5.9e-86 324.3 1735 25.0
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 1.7e-85 322.8 1831 24.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 1.7e-85 322.8 1766 25.8
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 2.2e-85 322.4 1725 25.2
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 2.2e-85 322.4 1795 25.7
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 2.9e-85 322.0 1747 25.1
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 6.5e-85 320.9 1741 25.8
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 8.5e-85 320.5 1828 25.5
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 8.5e-85 320.5 1797 24.7
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.1e-84 320.1 1798 25.0
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 1.1e-84 320.1 1795 25.7
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 2.5e-84 318.9 1865 24.6
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 3.2e-84 318.5 1807 25.6
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 5.5e-84 317.8 1741 25.5
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 9.4e-84 317.0 1822 26.0
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 1.6e-83 316.2 1741 25.7
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 4.6e-83 314.7 1850 25.1
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 4.6e-83 314.7 1812 25.9
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 7.9e-83 313.9 1796 25.2
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 1.0e-82 313.5 1823 25.3
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 1.4e-82 313.2 1827 25.5
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 1.8e-82 312.8 1818 25.5
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 3.3e-81 308.5 1825 25.0
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 5.7e-81 307.8 1776 24.3
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 9.7e-81 307.0 1763 24.7
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 2.2e-80 305.8 1756 25.5
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 8.2e-80 303.9 1744 26.1
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 8.2e-80 303.9 1762 24.3
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 1.4e-79 303.1 1797 24.3
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 1.4e-79 303.1 1763 24.6
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.8e-79 302.8 1763 24.6
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 2.4e-79 302.4 1823 24.5
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 2.4e-79 302.4 1723 24.0
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 5.3e-79 301.2 1760 24.7
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 9.1e-79 300.4 1763 24.6
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 2.0e-78 299.3 1763 24.5
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 5.0e-77 294.7 1785 25.3
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 2.1e-75 289.3 1852 24.7
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.0e-74 287.0 1858 26.9
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 1.8e-74 286.2 1727 25.0
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.0e-73 282.7 1811 24.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 1.0e-69 270.4 1619 24.2
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.1e-68 266.9 1160 27.6
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 6.1e-67 261.2 1153 26.5
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 6.1e-67 261.2 1502 25.4
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 2.8e-64 252.3 1480 24.5
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 5.9e-62 244.6 1575 23.7
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 3.0e-58 232.3 1747 23.1
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 2.6e-57 229.2 2031 24.6
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 3.1e-55 222.2 1615 23.7
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.1e-55 221.9 1109 25.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 9.1e-55 220.7 840 25.5
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 5.9e-54 218.0 1675 24.4
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.3e-53 216.9 679 29.3
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 6.1e-51 208.0 1580 22.4
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.3e-50 206.1 352 38.9
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 1.6e-46 193.4 1678 23.5
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 7.8e-46 191.0 843 23.6
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 5.0e-45 188.3 1685 23.6
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.4e-42 180.3 1658 24.1
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.4e-42 180.3 831 25.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 3.3e-36 159.1 679 26.4
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 4.0e-34 152.1 190 43.2
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.2e-24 119.8 216 31.5
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 8.3e-24 117.9 858 24.4
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.4e-23 116.3 443 28.9
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.1e-23 114.8 158 41.1
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.2e-22 114.0 392 30.1
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 2.1e-22 113.2 1238 22.4
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.7e-22 112.8 106 51.9
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.7e-21 110.2 109 48.6
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 6.6e-21 108.2 102 52.9
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.5e-20 107.1 670 22.7
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 5.6e-20 105.1 155 38.1
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.4e-18 99.8 467 27.8
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 5.4e-15 88.6 162 34.6
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 2.1e-14 86.7 308 28.6
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 4.6e-14 85.5 648 23.6
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.9e-12 80.1 172 38.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 5.6e-12 78.6 304 27.0
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.7e-08 67.0 235 28.9
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.7e-08 67.0 56 48.2
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.2e-07 62.4 263 26.6
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 9.3e-07 61.2 55 47.3


User provided reference genes

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