Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 0.0e+00 1628.6 826 100.0
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.3e-181 641.0 925 44.3
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.4e-159 567.8 866 41.9
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 1.4e-148 531.2 857 39.3
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 5.5e-148 529.3 858 40.0
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 9.3e-148 528.5 845 39.1
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 2.7e-147 526.9 853 39.7
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 3.5e-147 526.6 856 38.1
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 4.6e-147 526.2 847 39.2
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 7.9e-147 525.4 848 39.3
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 1.1e-145 521.5 841 38.8
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 1.9e-145 520.8 843 38.9
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 2.2e-144 517.3 851 39.1
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 2.8e-144 516.9 843 39.6
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 3.7e-144 516.5 847 38.6
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 3.7e-144 516.5 847 39.1
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 6.3e-144 515.8 840 38.5
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 4.1e-143 513.1 852 38.8
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 5.3e-143 512.7 842 39.2
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 6.9e-143 512.3 839 38.7
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 6.9e-143 512.3 842 38.6
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 1.2e-142 511.5 858 37.6
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 1.5e-142 511.1 841 39.0
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 2.0e-142 510.8 852 38.7
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 2.0e-142 510.8 849 37.9
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 3.4e-142 510.0 849 38.9
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 4.5e-142 509.6 844 39.5
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 4.5e-142 509.6 853 38.5
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 5.9e-142 509.2 849 38.5
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 5.9e-142 509.2 851 38.1
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 5.9e-142 509.2 857 38.9
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 7.7e-142 508.8 841 39.2
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.0e-141 508.4 851 39.0
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 1.3e-141 508.1 849 39.0
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 1.7e-141 507.7 849 39.0
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 2.2e-141 507.3 845 38.3
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 2.2e-141 507.3 851 38.3
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 2.9e-141 506.9 864 37.8
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 3.8e-141 506.5 857 37.6
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 3.8e-141 506.5 845 38.1
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 3.8e-141 506.5 846 37.9
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 5.0e-141 506.1 851 38.2
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 6.5e-141 505.8 843 38.9
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 6.5e-141 505.8 838 38.1
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 6.5e-141 505.8 845 37.9
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 8.5e-141 505.4 846 37.8
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 8.5e-141 505.4 849 38.2
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 1.1e-140 505.0 848 37.7
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 1.4e-140 504.6 849 38.6
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 1.4e-140 504.6 852 37.7
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 1.9e-140 504.2 843 39.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 1.9e-140 504.2 851 39.0
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.9e-140 504.2 843 38.2
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 2.5e-140 503.8 842 38.4
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 2.5e-140 503.8 852 39.2
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 2.5e-140 503.8 849 37.3
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.5e-140 503.8 847 38.3
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 3.2e-140 503.4 844 38.2
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 5.5e-140 502.7 854 38.5
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 7.2e-140 502.3 847 38.0
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 9.4e-140 501.9 849 38.3
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 1.2e-139 501.5 856 38.2
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 1.2e-139 501.5 848 38.0
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 1.6e-139 501.1 843 38.9
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 1.6e-139 501.1 843 38.6
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 1.6e-139 501.1 843 38.9
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 1.6e-139 501.1 845 38.3
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 2.7e-139 500.4 851 38.7
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 2.7e-139 500.4 842 38.1
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 3.6e-139 500.0 846 38.8
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 3.6e-139 500.0 846 38.4
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 6.1e-139 499.2 846 38.8
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 7.9e-139 498.8 858 37.2
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 7.9e-139 498.8 854 38.4
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 1.8e-138 497.7 849 38.0
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 2.3e-138 497.3 844 38.3
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 2.3e-138 497.3 859 37.7
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 5.1e-138 496.1 847 38.4
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 6.7e-138 495.7 846 38.2
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 8.8e-138 495.4 842 37.6
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 2.0e-137 494.2 850 37.8
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 5.7e-137 492.7 853 37.0
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.7e-136 491.1 856 37.6
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 2.2e-136 490.7 838 38.4
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 2.2e-136 490.7 856 37.3
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 2.2e-136 490.7 848 38.1
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 2.2e-136 490.7 858 36.8
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 4.8e-136 489.6 843 38.0
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 4.8e-136 489.6 855 37.5
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 6.3e-136 489.2 852 38.3
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 1.1e-135 488.4 912 36.0
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 1.8e-135 487.6 845 38.0
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 1.8e-135 487.6 848 36.9
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 2.6e-134 483.8 852 36.9
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 5.9e-134 482.6 841 37.1
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 5.9e-134 482.6 840 37.0
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 5.0e-133 479.6 851 38.0
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 1.9e-132 477.6 899 36.4
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 1.2e-131 474.9 839 36.8
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 3.0e-130 470.3 857 35.8
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 6.7e-130 469.2 926 35.5
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 1.1e-129 468.4 842 36.6
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 4.4e-129 466.5 806 38.0
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 2.2e-128 464.2 838 36.3
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.4e-127 460.7 831 36.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 3.1e-127 460.3 833 36.1
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 3.1e-127 460.3 833 36.1
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 5.9e-126 456.1 865 35.5
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 2.9e-125 453.8 805 38.4
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 1.3e-120 438.3 814 37.0
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 1.7e-120 438.0 865 35.4
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.5e-118 430.3 851 35.1
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 3.5e-118 430.3 755 38.0
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 5.7e-113 412.9 864 34.8
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 2.4e-111 407.5 966 31.6
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 6.3e-104 382.9 848 32.8
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 4.2e-100 370.2 617 37.6
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.6e-99 368.2 622 37.8
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 8.6e-93 345.9 862 31.8
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 3.1e-74 284.3 430 40.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.1e-69 266.9 819 29.1
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 8.4e-56 223.0 401 35.9
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 4.3e-36 157.5 374 34.0
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.4e-36 156.8 828 23.8
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.1e-35 155.2 253 39.5
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 2.2e-32 145.2 216 41.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 5.3e-26 124.0 197 38.6
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.8e-24 117.9 323 29.7
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.8e-21 109.0 238 33.2
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.5e-20 105.1 108 46.3
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.9e-15 89.0 108 43.5
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.0e-12 79.0 255 27.5
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.4e-10 72.0 136 36.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.2e-09 69.7 60 45.0
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.5e-09 67.8 156 35.3
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.3e-08 66.2 151 31.8
Cfa024859 Carpinus fangiana HOM05D001091 ORTHO05D125000 1.9e-07 62.4 134 31.3
Sed0015765 Sechium edule HOM05D004014 ORTHO05D005890 4.2e-07 61.2 293 25.9
AT1G51710 Arabidopsis thaliana HOM05D004014 ORTHO05D005890 5.5e-07 60.8 159 30.2
MD17G1176500 Malus domestica HOM05D004014 ORTHO05D005890 9.4e-07 60.1 159 29.6
BcaC08g43331 Brassica carinata HOM05D004014 ORTHO05D005890 3.6e-06 58.2 159 32.1
Hund00756 Selenicereus undatus HOM05D004014 ORTHO05D005890 3.6e-06 58.2 334 23.7
BcaC01g01290 Brassica carinata HOM05D004014 ORTHO05D005890 4.7e-06 57.8 163 31.3
A08p02550 Brassica napus HOM05D004014 ORTHO05D005890 4.7e-06 57.8 163 31.3
C03p90260 Brassica napus HOM05D004014 ORTHO05D005890 4.7e-06 57.8 163 31.3
BolC3t21348H Brassica oleracea HOM05D004014 ORTHO05D005890 4.7e-06 57.8 163 31.3
BraA08t32295Z Brassica rapa HOM05D004014 ORTHO05D005890 4.7e-06 57.8 163 31.3
C06p06860 Brassica napus HOM05D004014 ORTHO05D005890 6.1e-06 57.4 159 31.4
BolC4t27959H Brassica oleracea HOM05D001091 ORTHO05D001020 6.1e-06 57.4 204 28.9
BolC6t35793H Brassica oleracea HOM05D004014 ORTHO05D005890 6.1e-06 57.4 159 31.4
Thhalv10011383m.g Eutrema salsugineum HOM05D004014 ORTHO05D005890 8.0e-06 57.0 191 29.3
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 8.0e-06 57.0 194 28.9
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 8.0e-06 57.0 89 41.6


User provided reference genes

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