Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 8.6e-207 723.4 359 100.0
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 5.6e-57 225.7 244 46.7
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 7.6e-54 215.3 308 41.6
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 2.9e-53 213.4 242 46.7
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 8.4e-53 211.8 248 44.4
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 7.1e-52 208.8 313 38.7
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 9.3e-52 208.4 250 44.4
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 9.3e-52 208.4 309 40.1
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 9.3e-52 208.4 240 45.0
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.2e-51 208.0 311 40.2
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.6e-51 207.6 237 44.7
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 2.7e-51 206.8 324 37.3
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 7.9e-51 205.3 240 42.9
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 7.9e-51 205.3 250 43.2
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-50 204.5 243 44.0
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.8e-50 204.1 310 38.7
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 2.3e-50 203.8 243 43.6
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 3.9e-50 203.0 242 44.2
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 6.7e-50 202.2 248 42.7
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 8.7e-50 201.8 316 38.0
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.9e-49 200.7 311 37.6
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 2.5e-49 200.3 239 46.0
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 4.3e-49 199.5 314 37.9
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 5.6e-49 199.1 315 37.1
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 9.6e-49 198.4 241 42.7
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 9.6e-49 198.4 312 37.5
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 1.3e-48 198.0 240 43.3
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 1.3e-48 198.0 315 38.4
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.3e-48 198.0 311 37.3
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.6e-48 197.6 312 38.5
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-48 197.2 312 37.5
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-48 197.2 312 37.5
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 2.1e-48 197.2 314 37.3
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 2.1e-48 197.2 323 36.5
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 2.8e-48 196.8 313 38.3
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 4.8e-48 196.1 241 43.6
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 4.8e-48 196.1 317 37.9
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 4.8e-48 196.1 206 48.5
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 4.8e-48 196.1 310 37.4
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 6.2e-48 195.7 312 37.8
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 6.2e-48 195.7 316 37.7
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 6.2e-48 195.7 269 41.3
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.2e-48 195.7 241 43.2
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 6.2e-48 195.7 241 43.2
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 6.2e-48 195.7 241 43.2
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 6.2e-48 195.7 238 44.1
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 6.2e-48 195.7 313 37.7
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 8.1e-48 195.3 315 37.5
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 1.1e-47 194.9 241 41.9
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.1e-47 194.9 314 36.6
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.1e-47 194.9 237 43.0
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.1e-47 194.9 311 37.3
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.1e-47 194.9 311 37.3
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.4e-47 194.5 243 43.6
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.4e-47 194.5 242 41.3
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.4e-47 194.5 238 44.1
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 1.4e-47 194.5 241 42.7
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 1.8e-47 194.1 241 43.2
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.8e-47 194.1 243 43.6
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.4e-47 193.7 311 36.7
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.4e-47 193.7 305 38.0
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.4e-47 193.7 317 36.9
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 3.1e-47 193.4 237 44.3
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 3.1e-47 193.4 311 37.6
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 4.0e-47 193.0 251 41.0
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 4.0e-47 193.0 251 41.0
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 4.0e-47 193.0 241 43.2
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 4.0e-47 193.0 241 43.2
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 4.0e-47 193.0 307 37.1
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 4.0e-47 193.0 316 36.4
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 4.0e-47 193.0 316 36.7
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 5.3e-47 192.6 312 36.5
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 6.9e-47 192.2 241 43.2
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 6.9e-47 192.2 237 43.9
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 6.9e-47 192.2 330 35.8
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 6.9e-47 192.2 312 36.9
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 6.9e-47 192.2 313 36.1
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 9.0e-47 191.8 312 37.8
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 9.0e-47 191.8 317 36.9
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 9.0e-47 191.8 238 42.9
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.2e-46 191.4 247 42.1
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-46 191.4 312 37.8
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-46 191.0 243 42.4
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.5e-46 191.0 315 36.2
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.5e-46 191.0 308 36.7
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.5e-46 191.0 241 42.7
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 2.0e-46 190.7 243 42.4
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 2.0e-46 190.7 243 42.4
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 2.0e-46 190.7 310 37.7
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 2.6e-46 190.3 242 41.7
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 3.4e-46 189.9 247 41.7
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 3.4e-46 189.9 241 42.3
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 3.4e-46 189.9 234 43.6
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 3.4e-46 189.9 247 41.7
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 4.5e-46 189.5 310 36.8
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 5.8e-46 189.1 310 36.8
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 5.8e-46 189.1 244 41.0
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 7.6e-46 188.7 237 42.6
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 7.6e-46 188.7 242 44.2
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 7.6e-46 188.7 241 41.9
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 1.0e-45 188.3 233 42.5
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 1.0e-45 188.3 273 39.6
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.0e-45 188.3 241 42.3
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 1.3e-45 188.0 299 37.5
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 1.3e-45 188.0 239 41.0
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 1.7e-45 187.6 310 36.8
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.2e-45 187.2 238 42.0
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.2e-45 187.2 242 41.7
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 2.9e-45 186.8 303 37.0
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.9e-45 186.8 241 41.5
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 3.8e-45 186.4 233 41.6
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 3.8e-45 186.4 233 41.6
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.8e-45 186.4 271 38.0
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 3.8e-45 186.4 314 36.6
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 6.5e-45 185.7 241 41.5
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-44 184.9 241 41.5
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.1e-44 184.9 248 40.3
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.4e-44 184.5 233 42.1
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 2.5e-44 183.7 313 34.5
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-44 183.3 233 41.2
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-44 183.3 233 41.2
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-44 183.3 233 41.2
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-44 183.0 233 42.1
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-44 183.0 233 42.1
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 5.5e-44 182.6 234 41.5
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 7.1e-44 182.2 241 41.1
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-43 181.4 233 42.1
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 2.7e-43 180.3 212 46.2
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 3.5e-43 179.9 247 40.1
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 4.6e-43 179.5 206 45.6
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 6.0e-43 179.1 244 41.4
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 6.0e-43 179.1 265 38.5
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 6.0e-43 179.1 249 42.2
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 7.9e-43 178.7 196 48.0
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 3.9e-42 176.4 199 45.2
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.5e-41 174.5 208 46.2
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.9e-41 174.1 247 40.1
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 2.5e-41 173.7 284 35.9
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.3e-41 173.3 238 42.4
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 2.8e-40 170.2 231 41.6
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 5.3e-39 166.0 334 34.1
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 6.9e-39 165.6 234 40.6
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.5e-38 164.5 197 43.1
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 5.8e-38 162.5 236 39.8
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.2e-35 154.8 216 42.1
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 1.2e-35 154.8 138 52.9
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 1.3e-34 151.4 222 40.1
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 5.1e-34 149.4 138 52.2
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.5e-33 147.9 183 43.7
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 2.5e-33 147.1 168 44.0
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 4.3e-33 146.4 241 36.5
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 5.7e-33 146.0 245 35.9
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.4e-31 141.4 253 35.6
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 3.1e-31 140.2 228 37.7
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 2.9e-29 133.7 373 27.6
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.1e-28 131.7 233 35.6
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.4e-28 131.3 335 29.3
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.9e-28 131.0 174 42.0
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 7.2e-28 129.0 152 46.1
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.4e-26 124.8 150 44.7
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.3e-26 124.0 124 47.6
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 5.1e-26 122.9 132 44.7
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 3.7e-24 116.7 130 43.8
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 1.4e-20 104.8 219 33.3
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.9e-18 96.7 206 33.0
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.5e-17 94.7 233 31.3
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 2.0e-17 94.4 105 44.8
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.2e-16 90.9 249 28.1
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 2.6e-14 84.0 77 50.6
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 1.7e-13 81.3 89 46.1
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-12 78.2 250 28.0
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 4.2e-12 76.6 89 46.1
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.2e-11 75.1 125 40.0
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-11 74.3 91 45.1
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 8.0e-11 72.4 121 34.7
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 7.4e-09 65.9 100 38.0
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 9.7e-09 65.5 108 36.1
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.2e-08 64.3 180 28.9
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 2.4e-07 60.8 42 61.9
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 4.5e-06 56.6 108 31.5


User provided reference genes

Program Settings