Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 0.0e+00 1663.7 933 100.0
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 8.6e-158 562.0 773 42.6
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 8.6e-158 562.0 773 42.8
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 2.5e-157 560.5 803 42.3
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 1.9e-152 544.3 783 42.1
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 1.2e-146 525.0 869 38.9
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 1.5e-146 524.6 782 41.6
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 1.3e-145 521.5 858 41.0
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 2.2e-145 520.8 781 40.8
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 2.9e-145 520.4 781 40.6
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 3.2e-144 516.9 810 40.0
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 9.2e-144 515.4 779 39.8
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 1.2e-143 515.0 785 40.9
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 2.1e-143 514.2 782 40.4
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 2.1e-143 514.2 812 40.4
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 2.1e-143 514.2 811 40.3
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 2.7e-143 513.8 783 40.6
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 2.7e-143 513.8 780 40.8
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 2.7e-143 513.8 785 40.9
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 2.7e-143 513.8 782 40.2
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 6.0e-143 512.7 784 40.2
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 7.8e-143 512.3 784 40.2
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 7.8e-143 512.3 802 39.9
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 7.8e-143 512.3 780 40.8
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 1.7e-142 511.1 786 39.9
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 1.7e-142 511.1 782 39.9
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 1.7e-142 511.1 781 39.9
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 2.3e-142 510.8 783 40.2
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 2.3e-142 510.8 780 40.4
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 3.0e-142 510.4 778 40.1
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 3.0e-142 510.4 778 40.1
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 3.9e-142 510.0 778 40.1
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 3.9e-142 510.0 805 39.5
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 3.9e-142 510.0 785 40.4
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 3.9e-142 510.0 783 39.7
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 3.9e-142 510.0 783 40.5
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 5.1e-142 509.6 803 39.9
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 6.6e-142 509.2 778 40.2
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 6.6e-142 509.2 778 40.1
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 6.6e-142 509.2 807 39.8
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 6.6e-142 509.2 802 39.7
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 6.6e-142 509.2 784 39.9
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 6.6e-142 509.2 780 40.1
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 8.6e-142 508.8 783 40.4
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 8.6e-142 508.8 785 40.6
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 8.6e-142 508.8 788 40.1
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 8.6e-142 508.8 788 40.1
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 8.6e-142 508.8 800 39.8
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 1.1e-141 508.4 815 39.9
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 1.1e-141 508.4 786 40.7
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 1.1e-141 508.4 802 39.9
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.1e-141 508.4 798 40.1
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 1.1e-141 508.4 778 40.5
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 1.5e-141 508.1 803 39.9
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.9e-141 507.7 802 40.1
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 3.3e-141 506.9 817 39.2
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 3.3e-141 506.9 783 40.1
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 3.3e-141 506.9 802 39.7
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 3.3e-141 506.9 802 39.8
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 7.3e-141 505.8 778 39.8
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 7.3e-141 505.8 807 40.5
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 9.6e-141 505.4 778 40.0
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 1.2e-140 505.0 821 39.1
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.6e-140 504.6 807 39.5
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 2.8e-140 503.8 798 39.8
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 4.7e-140 503.1 811 40.6
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 8.1e-140 502.3 808 39.4
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.1e-139 501.9 807 39.8
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 2.4e-139 500.7 779 39.9
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 2.4e-139 500.7 780 39.9
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 1.2e-138 498.4 812 39.4
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 1.5e-138 498.0 815 39.5
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 1.5e-138 498.0 806 38.7
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 3.4e-138 496.9 817 38.4
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 3.4e-138 496.9 812 39.3
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 5.8e-138 496.1 797 39.6
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 2.2e-137 494.2 757 40.4
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 4.9e-137 493.0 807 38.9
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 6.4e-137 492.7 806 39.2
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 6.4e-137 492.7 807 38.8
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 6.4e-137 492.7 803 39.0
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.4e-136 491.5 796 39.8
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 7.1e-136 489.2 792 39.1
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 1.0e-134 485.3 797 39.4
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 1.9e-133 481.1 797 39.0
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 4.3e-133 479.9 787 38.8
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 4.3e-133 479.9 787 38.8
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 9.6e-133 478.8 792 38.8
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 9.6e-133 478.8 781 38.7
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 6.9e-131 472.6 805 38.0
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 1.2e-130 471.9 812 38.3
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 1.2e-130 471.9 812 38.3
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 3.4e-130 470.3 799 38.8
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 3.4e-130 470.3 866 36.3
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 3.8e-129 466.8 739 39.2
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 4.9e-129 466.5 786 38.9
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 3.5e-127 460.3 773 38.4
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 6.0e-127 459.5 711 39.7
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 1.0e-126 458.8 807 38.0
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 3.0e-126 457.2 767 37.9
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 7.4e-125 452.6 707 39.5
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 1.4e-123 448.4 836 35.8
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.1e-123 447.2 772 37.7
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 6.9e-123 446.0 724 39.0
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 4.5e-122 443.4 794 37.3
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 3.2e-120 437.2 727 38.9
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 2.1e-119 434.5 689 39.6
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 1.3e-118 431.8 777 37.2
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 4.3e-117 426.8 793 37.1
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 2.1e-116 424.5 802 36.0
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 5.3e-115 419.9 779 36.6
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 2.2e-113 414.5 778 35.6
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 4.9e-113 413.3 778 35.5
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 3.9e-110 403.7 794 35.4
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 2.1e-108 397.9 691 38.5
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 1.8e-107 394.8 624 39.4
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 3.1e-107 394.0 783 36.0
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 8.5e-105 386.0 672 37.2
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 7.9e-103 379.4 806 34.5
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 8.7e-102 375.9 822 33.9
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 4.5e-98 363.6 799 33.3
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 1.2e-95 355.5 895 33.1
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 2.3e-94 351.3 668 35.8
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 2.0e-90 338.2 697 33.4
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 2.6e-90 337.8 790 32.8
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 3.8e-89 334.0 466 43.1
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.8e-86 325.1 770 32.2
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 1.1e-85 322.4 491 41.5
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 2.0e-85 321.6 585 35.9
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 5.7e-85 320.1 456 43.6
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 9.4e-80 302.8 580 36.6
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 2.1e-79 301.6 805 31.6
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 8.0e-79 299.7 320 50.6
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 7.5e-69 266.5 677 30.7
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 5.4e-67 260.4 511 36.4
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 8.5e-65 253.1 257 54.5
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 9.2e-59 233.0 247 52.2
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 5.6e-56 223.8 390 37.9
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 3.6e-55 221.1 791 25.9
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 6.6e-49 200.3 316 38.0
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 4.3e-48 197.6 336 36.3
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 8.0e-47 193.4 321 37.7
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 3.6e-39 167.9 400 31.2
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 1.1e-35 156.4 177 48.6
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 1.3e-33 149.4 140 57.1
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 1.3e-33 149.4 192 46.4
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 3.4e-29 134.8 165 41.2
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 3.8e-28 131.3 113 61.1
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 1.2e-21 109.8 92 66.3
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 3.4e-21 108.2 143 41.3
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 3.8e-20 104.8 118 44.1
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 8.4e-20 103.6 218 32.6
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 4.2e-19 101.3 128 39.1
CARHR041020 Cardamine hirsuta HOM05D003391 ORTHO05D013251 6.0e-18 97.4 131 39.7
SEGI_15776 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 6.0e-18 97.4 146 34.9
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.3e-17 95.5 88 54.5
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 1.9e-16 92.4 124 46.8
SEGI_21663 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.6e-13 82.0 90 45.6
CARHR292060 Cardamine hirsuta HOM05D003391 ORTHO05D019401 3.2e-11 75.1 50 80.0
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 6.0e-10 70.9 123 39.8
CARHR040520 Cardamine hirsuta HOM05D003391 ORTHO05D005563 9.6e-08 63.5 60 48.3
ECA246G3223 Erigeron canadensis HOM05D001124 ORTHO05D001004 5.3e-06 57.8 57 56.1


User provided reference genes

Program Settings