Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO12G260 Micromonas commoda HOM05D003800 ORTHO05D004549 2.1e-168 595.5 285 100.0
Cre11.g467544 Chlamydomonas reinhardtii HOM05D003800 ORTHO05D004549 2.6e-81 306.2 255 56.5
ATR1145G078 Amborella trichopoda HOM05D003800 ORTHO05D004549 1.4e-58 230.7 276 43.5
Gohir.D08G246300 Gossypium hirsutum HOM05D003800 ORTHO05D004549 2.0e-57 226.9 277 44.4
VMungo1383G1495 Vigna mungo HOM05D003800 ORTHO05D004549 2.6e-57 226.5 257 45.5
Lj1A574T25 Lonicera japonica HOM05D003800 ORTHO05D004549 3.4e-57 226.1 242 47.5
Peaxi162Scf00048g00815 Petunia axillaris HOM05D003800 ORTHO05D004549 5.8e-57 225.3 257 45.5
Os05g0413400 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 7.6e-57 224.9 284 44.7
PGSC0003DMG400007268 Solanum tuberosum HOM05D003800 ORTHO05D004549 7.6e-57 224.9 256 46.1
Carub.0003s0188 Capsella rubella HOM05D003800 ORTHO05D004549 9.9e-57 224.6 242 46.7
CSS0014154 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 1.3e-56 224.2 244 47.1
Dinv10508 Davidia involucrata HOM05D003800 ORTHO05D004549 1.3e-56 224.2 266 45.9
vmacro10405 Vaccinium macrocarpon HOM05D003800 ORTHO05D004549 1.3e-56 224.2 265 45.3
THA.LOC104802955 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 1.7e-56 223.8 272 44.9
BcaC05g30508 Brassica carinata HOM05D003800 ORTHO05D004549 2.2e-56 223.4 275 43.6
BraA03t12481Z Brassica rapa HOM05D003800 ORTHO05D004549 2.2e-56 223.4 272 44.9
Gohir.A08G225900 Gossypium hirsutum HOM05D003800 ORTHO05D004549 2.2e-56 223.4 277 44.0
Gorai.004G262800 Gossypium raimondii HOM05D003800 ORTHO05D004549 2.2e-56 223.4 277 44.0
AT5G16440 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 2.9e-56 223.0 241 46.9
Sopen04g025300 Solanum pennellii HOM05D003800 ORTHO05D004549 2.9e-56 223.0 256 46.1
Atru.chr12.1779 Acer truncatum HOM05D003800 ORTHO05D004549 3.8e-56 222.6 281 44.8
Aqoxy2G04026 Aquilegia oxysepala HOM05D003800 ORTHO05D004549 3.8e-56 222.6 262 44.3
Glyma.09G250200 Glycine max HOM05D003800 ORTHO05D004549 3.8e-56 222.6 254 45.3
Medtr7g080060 Medicago truncatula HOM05D003800 ORTHO05D004549 3.8e-56 222.6 276 44.6
TAR365G0109 Trochodendron aralioides HOM05D003800 ORTHO05D004549 3.8e-56 222.6 242 47.9
AL3G12190 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 4.9e-56 222.2 242 46.3
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 4.9e-56 222.2 242 46.7
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 4.9e-56 222.2 242 46.7
CSS0026150 Camellia sinensis var. sinensis HOM05D003800 ORTHO05D004549 4.9e-56 222.2 279 43.0
Migut.F01872 Erythranthe guttata HOM05D003800 ORTHO05D004549 4.9e-56 222.2 280 43.2
Os07g0546000 Oryza sativa ssp. japonica HOM05D003800 ORTHO05D004549 4.9e-56 222.2 255 45.9
Rhsim09G0130100 Rhododendron simsii HOM05D003800 ORTHO05D004549 4.9e-56 222.2 281 45.2
AT3G02780 Arabidopsis thaliana HOM05D003800 ORTHO05D004549 6.4e-56 221.9 242 46.7
Phvul.008G054025 Phaseolus vulgaris HOM05D003800 ORTHO05D004549 6.4e-56 221.9 289 42.6
Solyc04g056390.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 6.4e-56 221.9 256 45.7
Actinidia06803 Actinidia chinensis HOM05D003800 ORTHO05D004549 8.4e-56 221.5 256 45.7
A03p33110 Brassica napus HOM05D003800 ORTHO05D004549 8.4e-56 221.5 271 44.6
A05p44340 Brassica napus HOM05D003800 ORTHO05D004549 8.4e-56 221.5 256 45.3
BraA06t23290Z Brassica rapa HOM05D003800 ORTHO05D004549 8.4e-56 221.5 256 45.3
Carub.0006s1463 Capsella rubella HOM05D003800 ORTHO05D004549 8.4e-56 221.5 242 47.1
Cc09_g03670 Coffea canephora HOM05D003800 ORTHO05D004549 8.4e-56 221.5 254 44.9
HanXRQChr04g0095031 Helianthus annuus HOM05D003800 ORTHO05D004549 8.4e-56 221.5 289 45.3
Lalb_Chr01g0020421 Lupinus albus HOM05D003800 ORTHO05D004549 8.4e-56 221.5 257 45.5
PGR119G0297 Punica granatum HOM05D003800 ORTHO05D004549 8.4e-56 221.5 272 44.1
Ah.04g158990 Amaranthus hybridus HOM05D003800 ORTHO05D004549 1.1e-55 221.1 274 44.5
BraA03t10104Z Brassica rapa HOM05D003800 ORTHO05D004549 1.1e-55 221.1 273 44.3
AUR62006651 Chenopodium quinoa HOM05D003800 ORTHO05D004549 1.1e-55 221.1 243 46.9
Thhalv10014571m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 1.1e-55 221.1 242 46.7
Lalb_Chr06g0168491 Lupinus albus HOM05D003800 ORTHO05D004549 1.1e-55 221.1 242 46.3
Nn7g38203 Nelumbo nucifera HOM05D003800 ORTHO05D004549 1.1e-55 221.1 271 44.3
Oeu023172.1 Olea europaea HOM05D003800 ORTHO05D004549 1.1e-55 221.1 255 46.7
Prupe.6G361700 Prunus persica HOM05D003800 ORTHO05D004549 1.1e-55 221.1 256 45.7
Sp3g01810 Schrenkiella parvula HOM05D003800 ORTHO05D004549 1.1e-55 221.1 261 44.8
BolC3t13395H Brassica oleracea HOM05D003800 ORTHO05D004549 1.4e-55 220.7 280 43.2
CBR_g48525 Chara braunii HOM05D003800 ORTHO05D004549 1.4e-55 220.7 240 47.5
Ciclev10012312m.g Citrus clementina HOM05D003800 ORTHO05D004549 1.4e-55 220.7 280 42.5
Eucgr.H01393 Eucalyptus grandis HOM05D003800 ORTHO05D004549 1.4e-55 220.7 273 44.7
Lsat_1_v5_gn_2_17540 Lactuca sativa HOM05D003800 ORTHO05D004549 1.4e-55 220.7 259 45.9
Psat3g138120 Pisum sativum HOM05D003800 ORTHO05D004549 1.4e-55 220.7 242 45.9
SMO367G0306 Selaginella moellendorffii HOM05D003800 ORTHO05D004549 1.4e-55 220.7 243 46.5
Zm00001eb323510 Zea mays HOM05D003800 ORTHO05D004549 1.4e-55 220.7 256 45.3
AL6G27370 Arabidopsis lyrata HOM05D003800 ORTHO05D004549 1.9e-55 220.3 282 44.0
CiPaw.07G080800 Carya illinoinensis HOM05D003800 ORTHO05D004549 1.9e-55 220.3 242 46.7
Glyma.18G242300 Glycine max HOM05D003800 ORTHO05D004549 1.9e-55 220.3 257 45.1
C03p08990 Brassica napus HOM05D003800 ORTHO05D004549 2.5e-55 219.9 273 44.0
Lj1g0015068 Lotus japonicus HOM05D003800 ORTHO05D004549 2.5e-55 219.9 259 45.6
Pp3c1_33430 Physcomitrium patens HOM05D003800 ORTHO05D004549 2.5e-55 219.9 242 45.9
EL10Ac4g09961 Beta vulgaris HOM05D003800 ORTHO05D004549 4.2e-55 219.2 272 44.9
AUR62000306 Chenopodium quinoa HOM05D003800 ORTHO05D004549 4.2e-55 219.2 243 46.5
Eucgr.A01783 Eucalyptus grandis HOM05D003800 ORTHO05D004549 4.2e-55 219.2 242 47.9
PSO675G7217 Papaver somniferum HOM05D003800 ORTHO05D004549 4.2e-55 219.2 263 45.2
Ah.06g195450 Amaranthus hybridus HOM05D003800 ORTHO05D004549 5.5e-55 218.8 242 46.7
BNapus_Darmor_BZH_scaffold_99p00290 Brassica napus HOM05D003800 ORTHO05D004549 5.5e-55 218.8 255 43.9
CAN.G217.10 Capsicum annuum HOM05D003800 ORTHO05D004549 5.5e-55 218.8 242 47.5
CARHR076790 Cardamine hirsuta HOM05D003800 ORTHO05D004549 5.5e-55 218.8 242 45.9
CARHR196820 Cardamine hirsuta HOM05D003800 ORTHO05D004549 5.5e-55 218.8 242 46.3
CsaV3_1G044500 Cucumis sativus L. HOM05D003800 ORTHO05D004549 5.5e-55 218.8 254 45.3
FvH4_6g00470 Fragaria vesca HOM05D003800 ORTHO05D004549 5.5e-55 218.8 284 43.7
FAN05G4594 Fragaria x ananassa HOM05D003800 ORTHO05D004549 5.5e-55 218.8 241 45.6
FAN09G3800 Fragaria x ananassa HOM05D003800 ORTHO05D004549 5.5e-55 218.8 284 44.0
Nitab4.5_0001435g0050 Nicotiana tabacum HOM05D003800 ORTHO05D004549 5.5e-55 218.8 275 43.6
PSO017G2843 Papaver somniferum HOM05D003800 ORTHO05D004549 7.1e-55 218.4 255 46.7
THA.LOC104820922 Tarenaya hassleriana HOM05D003800 ORTHO05D004549 7.1e-55 218.4 244 45.9
MSTRG.8210 Avicennia marina HOM05D003800 ORTHO05D004549 9.3e-55 218.0 284 43.0
BcaC05g30511 Brassica carinata HOM05D003800 ORTHO05D004549 9.3e-55 218.0 242 45.9
C09p75900 Brassica napus HOM05D003800 ORTHO05D004549 9.3e-55 218.0 242 45.9
BolC5t35067H Brassica oleracea HOM05D003800 ORTHO05D004549 9.3e-55 218.0 242 45.9
Thhalv10020933m.g Eutrema salsugineum HOM05D003800 ORTHO05D004549 9.3e-55 218.0 281 42.7
MD12G1086800 Malus domestica HOM05D003800 ORTHO05D004549 9.3e-55 218.0 241 45.6
Nitab4.5_0000971g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 9.3e-55 218.0 242 45.9
GSVIVG01019089001 Vitis vinifera HOM05D003800 ORTHO05D004549 9.3e-55 218.0 242 46.3
Actinidia38903 Actinidia chinensis HOM05D003800 ORTHO05D004549 1.2e-54 217.6 242 45.5
Duzib128G1178 Durio zibethinus HOM05D003800 ORTHO05D004549 1.2e-54 217.6 276 44.2
Mapoly0066s0080 Marchantia polymorpha HOM05D003800 ORTHO05D004549 1.2e-54 217.6 242 45.5
Nitab4.5_0003099g0070 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.2e-54 217.6 242 45.9
PSO357G0181 Papaver somniferum HOM05D003800 ORTHO05D004549 1.2e-54 217.6 244 46.7
RcHm_v2.0_Chr3g0447851 Rosa chinensis HOM05D003800 ORTHO05D004549 1.2e-54 217.6 300 41.3
MSTRG.329 Avicennia marina HOM05D003800 ORTHO05D004549 1.6e-54 217.2 242 46.3
Actinidia03293 Actinidia chinensis HOM05D003800 ORTHO05D004549 2.1e-54 216.9 255 45.1
CsaV3_2G009720 Cucumis sativus L. HOM05D003800 ORTHO05D004549 2.1e-54 216.9 257 45.1
MD04G1245100 Malus domestica HOM05D003800 ORTHO05D004549 2.1e-54 216.9 241 45.2
Sc09g0001450 Simmondsia chinensis HOM05D003800 ORTHO05D004549 2.1e-54 216.9 270 43.7
SGA_v2.0_scaffold340G49303 Striga asiatica HOM05D003800 ORTHO05D004549 2.1e-54 216.9 251 44.6
Cpa.g.sc1105.3 Carica papaya HOM05D003800 ORTHO05D004549 2.7e-54 216.5 240 46.2
Cfa006258 Carpinus fangiana HOM05D003800 ORTHO05D004549 2.7e-54 216.5 282 44.0
CiPaw.08G114800 Carya illinoinensis HOM05D003800 ORTHO05D004549 2.7e-54 216.5 242 46.7
ClCG03G010650 Citrullus lanatus HOM05D003800 ORTHO05D004549 2.7e-54 216.5 255 44.3
MELO3C010053.2 Cucumis melo HOM05D003800 ORTHO05D004549 2.7e-54 216.5 255 44.3
HanXRQChr09g0257801 Helianthus annuus HOM05D003800 ORTHO05D004549 2.7e-54 216.5 240 45.8
Manes.13G005300 Manihot esculenta HOM05D003800 ORTHO05D004549 2.7e-54 216.5 242 46.7
QL08p020626 Quercus lobata HOM05D003800 ORTHO05D004549 2.7e-54 216.5 271 44.3
Thecc.05G194400 Theobroma cacao HOM05D003800 ORTHO05D004549 2.7e-54 216.5 277 43.0
TPR.G31802 Trifolium pratense HOM05D003800 ORTHO05D004549 2.7e-54 216.5 242 45.5
TWI18G1194 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 2.7e-54 216.5 288 44.1
CDE05G0693 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 3.5e-54 216.1 241 44.8
MELO3C008717.2 Cucumis melo HOM05D003800 ORTHO05D004549 3.5e-54 216.1 273 44.3
Dinv29095 Davidia involucrata HOM05D003800 ORTHO05D004549 4.6e-54 215.7 241 45.6
PGSC0003DMG400023359 Solanum tuberosum HOM05D003800 ORTHO05D004549 4.6e-54 215.7 244 45.5
MSTRG.27390 Avicennia marina HOM05D003800 ORTHO05D004549 6.0e-54 215.3 285 41.1
BcaNung04309 Brassica carinata HOM05D003800 ORTHO05D004549 6.0e-54 215.3 242 45.0
BolC1t05871H Brassica oleracea HOM05D003800 ORTHO05D004549 6.0e-54 215.3 242 45.0
CAN.G694.23 Capsicum annuum HOM05D003800 ORTHO05D004549 6.0e-54 215.3 240 45.8
CAN.G694.24 Capsicum annuum HOM05D003800 ORTHO05D004549 6.0e-54 215.3 242 46.7
Duzib177G0232 Durio zibethinus HOM05D003800 ORTHO05D004549 6.0e-54 215.3 275 43.6
Solyc05g055760.3 Solanum lycopersicum HOM05D003800 ORTHO05D004549 7.9e-54 214.9 242 45.5
Sopen05g034170 Solanum pennellii HOM05D003800 ORTHO05D004549 7.9e-54 214.9 242 45.5
BcaB04g21400 Brassica carinata HOM05D003800 ORTHO05D004549 1.0e-53 214.5 242 45.0
Manes.12G005500 Manihot esculenta HOM05D003800 ORTHO05D004549 1.0e-53 214.5 287 43.2
TAR636G3604 Trochodendron aralioides HOM05D003800 ORTHO05D004549 1.0e-53 214.5 242 46.3
ClCG11G010680 Citrullus lanatus HOM05D003800 ORTHO05D004549 1.3e-53 214.2 258 45.0
DCAR_015080 Daucus carota HOM05D003800 ORTHO05D004549 1.3e-53 214.2 242 46.3
ECA232G0651 Erigeron canadensis HOM05D003800 ORTHO05D004549 1.3e-53 214.2 241 45.2
MBI07_g36332_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 1.8e-53 213.8 257 43.2
Potri.019G053700 Populus trichocarpa HOM05D003800 ORTHO05D004549 2.3e-53 213.4 240 45.8
PGR031G1622 Punica granatum HOM05D003800 ORTHO05D004549 2.3e-53 213.4 289 41.5
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 2.3e-53 213.4 240 45.0
TWI75G1224 Tripterygium wilfordii HOM05D003800 ORTHO05D004549 3.9e-53 212.6 273 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2844 Anthoceros agrestis HOM05D003800 ORTHO05D004549 5.1e-53 212.2 286 40.9
A03p07770 Brassica napus HOM05D003800 ORTHO05D004549 5.1e-53 212.2 277 42.2
Migut.F02135 Erythranthe guttata HOM05D003800 ORTHO05D004549 5.1e-53 212.2 252 43.7
Aa31LG5G13250 Aethionema arabicum HOM05D003800 ORTHO05D004549 6.7e-53 211.8 242 45.9
Aa31LG11G13220 Aethionema arabicum HOM05D003800 ORTHO05D004549 1.9e-52 210.3 241 43.6
Zm00001eb349410 Zea mays HOM05D003800 ORTHO05D004549 1.9e-52 210.3 302 39.7
arahy.Tifrunner.gnm1.ann1.BW88YF Arachis hypogaea HOM05D003800 ORTHO05D004549 3.3e-52 209.5 267 43.1
CDE05G3592 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 4.3e-52 209.1 220 46.8
Sed0012073 Sechium edule HOM05D003800 ORTHO05D004549 4.3e-52 209.1 255 44.7
unitig_61.g26276 Utricularia gibba HOM05D003800 ORTHO05D004549 4.3e-52 209.1 233 45.5
FAN02G2831 Fragaria x ananassa HOM05D003800 ORTHO05D004549 5.6e-52 208.8 232 45.3
Peaxi162Scf00156g00114 Petunia axillaris HOM05D003800 ORTHO05D004549 7.4e-52 208.4 262 42.7
SGA_v2.0_scaffold62G21505 Striga asiatica HOM05D003800 ORTHO05D004549 7.4e-52 208.4 309 40.8
BraA01t04615Z Brassica rapa HOM05D003800 ORTHO05D004549 1.6e-51 207.2 255 42.4
CDE02G3521 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 2.8e-51 206.5 241 44.0
Lsat_1_v5_gn_8_2340 Lactuca sativa HOM05D003800 ORTHO05D004549 4.8e-51 205.7 232 45.3
SEGI_07465 Sequoiadendron giganteum HOM05D003800 ORTHO05D004549 6.2e-51 205.3 223 46.2
PSO170G0032 Papaver somniferum HOM05D003800 ORTHO05D004549 5.8e-49 198.7 244 43.9
Nitab4.5_0000083g0120 Nicotiana tabacum HOM05D003800 ORTHO05D004549 1.0e-48 198.0 312 38.5
Sabra19G0062900 Salix brachista HOM05D003800 ORTHO05D004549 4.2e-47 192.6 259 40.9
ECA238G3407 Erigeron canadensis HOM05D003800 ORTHO05D004549 2.1e-46 190.3 216 47.7
PRCOL_00001613 Prasinoderma coloniale HOM05D003800 ORTHO05D004549 2.7e-46 189.9 230 45.2
arahy.Tifrunner.gnm1.ann1.7Y2C76 Arachis hypogaea HOM05D003800 ORTHO05D004549 7.9e-46 188.3 241 43.2
MBI11_g44548_MAGBIO Magnolia biondii HOM05D003800 ORTHO05D004549 2.5e-44 183.3 219 43.4
Haze_04560 Corylus avellana HOM05D003800 ORTHO05D004549 3.3e-44 183.0 218 44.0
BcaB04g19388 Brassica carinata HOM05D003800 ORTHO05D004549 2.8e-43 179.9 242 43.0
Oeu046895.1 Olea europaea HOM05D003800 ORTHO05D004549 8.2e-43 178.3 208 45.7
FAN14G0085 Fragaria x ananassa HOM05D003800 ORTHO05D004549 1.3e-40 171.0 217 42.4
Ca_07990_v3 Cicer arietinum L. HOM05D003800 ORTHO05D004549 7.9e-38 161.8 242 38.0
Zm00001eb288110 Zea mays HOM05D003800 ORTHO05D004549 3.0e-37 159.8 203 41.4
Haze_26091 Corylus avellana HOM05D003800 ORTHO05D004549 3.9e-37 159.5 219 37.9
Sed0006377 Sechium edule HOM05D003800 ORTHO05D004549 2.2e-35 153.7 155 52.9
Lju50C0T2 Lonicera japonica HOM05D003800 ORTHO05D004549 3.1e-34 149.8 183 43.7
Sp6g27750 Schrenkiella parvula HOM05D003800 ORTHO05D004549 1.2e-33 147.9 139 52.5
CBR_g16018 Chara braunii HOM05D000019 ORTHO05D000353 2.4e-26 123.6 240 32.9
COL.COLO4_38023 Corchorus olitorius HOM05D003800 ORTHO05D004549 1.9e-23 114.0 142 41.5
BNapus_Darmor_BZH_scaffold_122p00260 Brassica napus HOM05D003800 ORTHO05D004549 7.7e-17 92.0 96 43.8
BNapus_Darmor_BZH_scaffold_122p00270 Brassica napus HOM05D003800 ORTHO05D004549 7.2e-15 85.5 81 50.6
HanXRQChr09g0257811 Helianthus annuus HOM05D003800 ORTHO05D004549 1.0e-13 81.6 125 38.4
CDE09G0057 Ceratophyllum demersum HOM05D003800 ORTHO05D004549 7.0e-10 68.9 62 54.8
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 1.9e-07 60.8 54 53.7
FvH4_6g42310 Fragaria vesca HOM05D003800 ORTHO05D045511 3.2e-07 60.1 63 49.2
FAN14G4609 Fragaria x ananassa HOM05D003800 ORTHO05D045511 3.2e-07 60.1 63 49.2


User provided reference genes

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