Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G633 Micromonas commoda HOM05D003708 ORTHO05D004452 8.7e-254 879.8 434 100.0
PRCOL_00005267 Prasinoderma coloniale HOM05D003708 ORTHO05D004452 1.3e-169 600.1 420 71.0
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 2.6e-24 117.5 431 29.2
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 4.4e-24 116.7 409 30.3
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 5.8e-24 116.3 425 27.5
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 7.6e-24 115.9 412 29.1
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 9.9e-24 115.5 404 29.7
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 1.3e-23 115.2 416 29.1
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.3e-23 115.2 407 31.0
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.3e-23 115.2 407 31.0
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 1.7e-23 114.8 431 29.2
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.7e-23 114.8 430 28.6
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 2.2e-23 114.4 416 30.8
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 2.9e-23 114.0 409 30.3
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 2.9e-23 114.0 411 29.9
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 2.9e-23 114.0 407 29.7
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 3.8e-23 113.6 404 29.7
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 3.8e-23 113.6 413 30.0
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 3.8e-23 113.6 407 30.5
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 3.8e-23 113.6 413 29.1
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 3.8e-23 113.6 413 30.0
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 3.8e-23 113.6 407 31.0
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 4.9e-23 113.2 413 30.0
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 4.9e-23 113.2 419 28.4
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 4.9e-23 113.2 414 30.0
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 6.4e-23 112.8 411 29.9
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 6.4e-23 112.8 410 30.7
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 8.4e-23 112.5 406 29.1
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 8.4e-23 112.5 411 30.7
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 8.4e-23 112.5 407 31.0
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 8.4e-23 112.5 409 29.8
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 8.4e-23 112.5 409 30.1
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 1.1e-22 112.1 414 30.0
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 1.1e-22 112.1 405 30.4
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.1e-22 112.1 409 30.1
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.1e-22 112.1 424 29.2
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 1.1e-22 112.1 408 28.7
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.1e-22 112.1 415 30.6
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 1.4e-22 111.7 403 29.0
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 1.9e-22 111.3 411 29.0
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 1.9e-22 111.3 416 30.5
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 1.9e-22 111.3 414 30.0
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 1.9e-22 111.3 409 30.1
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 2.4e-22 110.9 416 29.1
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 2.4e-22 110.9 410 28.0
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 2.4e-22 110.9 416 30.5
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 2.4e-22 110.9 410 30.0
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 2.4e-22 110.9 409 30.1
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 2.4e-22 110.9 425 27.5
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 3.2e-22 110.5 416 29.6
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 3.2e-22 110.5 409 29.6
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 3.2e-22 110.5 409 29.6
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 3.2e-22 110.5 417 29.5
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 3.2e-22 110.5 409 30.1
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 4.2e-22 110.2 411 29.2
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 4.2e-22 110.2 416 29.3
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 4.2e-22 110.2 416 29.6
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 4.2e-22 110.2 416 29.3
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 4.2e-22 110.2 425 27.5
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 5.4e-22 109.8 416 29.6
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 5.4e-22 109.8 416 29.6
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 5.4e-22 109.8 416 29.6
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 5.4e-22 109.8 408 29.4
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 5.4e-22 109.8 408 29.2
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 5.4e-22 109.8 404 29.5
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 7.1e-22 109.4 404 29.5
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 7.1e-22 109.4 409 28.9
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 7.1e-22 109.4 405 29.4
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 9.3e-22 109.0 409 28.9
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 9.3e-22 109.0 416 29.6
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 9.3e-22 109.0 416 28.8
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 9.3e-22 109.0 404 29.5
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 9.3e-22 109.0 417 29.5
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 9.3e-22 109.0 417 29.5
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 9.3e-22 109.0 405 30.1
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 9.3e-22 109.0 405 30.1
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 9.3e-22 109.0 411 29.7
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 9.3e-22 109.0 414 29.2
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 9.3e-22 109.0 405 29.9
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 1.2e-21 108.6 409 29.3
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 1.2e-21 108.6 407 29.5
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 1.2e-21 108.6 413 29.1
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.2e-21 108.6 405 30.1
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.2e-21 108.6 409 29.6
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.6e-21 108.2 414 30.2
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.6e-21 108.2 414 31.4
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.6e-21 108.2 413 28.8
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.6e-21 108.2 414 29.7
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 1.6e-21 108.2 409 29.3
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 1.6e-21 108.2 405 29.9
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 1.6e-21 108.2 409 28.9
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 2.1e-21 107.8 416 29.3
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 2.1e-21 107.8 417 29.7
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 2.1e-21 107.8 413 28.8
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.1e-21 107.8 405 29.9
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 2.7e-21 107.5 407 28.7
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 2.7e-21 107.5 409 28.9
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.7e-21 107.5 409 29.1
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 3.5e-21 107.1 387 31.3
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.6e-21 106.7 417 29.0
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 6.0e-21 106.3 413 27.8
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 6.0e-21 106.3 416 29.1
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 6.0e-21 106.3 406 29.3
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 7.9e-21 105.9 427 28.8
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 7.9e-21 105.9 418 29.2
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 1.0e-20 105.5 436 29.1
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 1.0e-20 105.5 411 29.0
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 1.0e-20 105.5 406 29.1
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 1.0e-20 105.5 428 28.0
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 1.3e-20 105.1 406 29.1
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 1.3e-20 105.1 398 28.6
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 1.7e-20 104.8 411 29.0
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.7e-20 104.8 414 30.2
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.7e-20 104.8 391 28.9
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 2.3e-20 104.4 423 28.6
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.3e-20 104.4 409 28.6
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 3.0e-20 104.0 419 30.1
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 3.9e-20 103.6 388 30.4
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 6.6e-20 102.8 449 27.4
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 8.7e-20 102.4 413 29.1
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 1.9e-19 101.3 390 29.5
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 7.3e-19 99.4 444 27.5
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 3.6e-18 97.1 405 28.9
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 3.6e-18 97.1 325 32.0
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 6.2e-18 96.3 407 28.5
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 3.1e-17 94.0 323 30.7
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 4.0e-17 93.6 421 27.8
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 6.9e-17 92.8 315 31.7
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 2.6e-16 90.9 420 28.3
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 3.4e-16 90.5 422 26.1
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 9.9e-16 89.0 268 32.1
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 1.3e-15 88.6 445 25.6
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 2.2e-15 87.8 413 27.6
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.9e-15 86.7 248 32.7
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 9.3e-14 82.4 205 33.7
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.1e-13 81.3 209 34.4
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 6.0e-13 79.7 335 26.9
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 3.0e-12 77.4 311 26.7
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 3.9e-12 77.0 210 31.9
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 5.1e-12 76.6 208 32.2
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 1.5e-11 75.1 331 27.5
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 5.6e-11 73.2 307 28.3
CBR_g46282 Chara braunii HOM05D003708 ORTHO05D004452 2.8e-10 70.9 164 37.2
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.4e-09 68.6 385 27.0
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 5.3e-09 66.6 207 33.8
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 2.2e-07 61.2 404 27.0
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 9.3e-06 55.8 129 37.2


User provided reference genes

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