Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G045 Micromonas commoda HOM05D001937 ORTHO05D003828 0.0e+00 3161.3 1947 100.0
CBR_g2821 Chara braunii HOM05D001937 ORTHO05D003828 6.0e-52 211.5 476 31.1
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 3.5e-44 185.7 487 29.8
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 4.6e-44 185.3 478 29.5
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 7.8e-44 184.5 478 29.5
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 1.0e-43 184.1 486 30.2
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 3.0e-43 182.6 480 28.8
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 6.6e-43 181.4 478 29.1
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 8.6e-43 181.0 478 29.3
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 8.6e-43 181.0 478 29.1
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 8.6e-43 181.0 481 30.4
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 1.1e-42 180.6 480 30.4
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 1.5e-42 180.3 481 29.7
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 1.9e-42 179.9 482 29.7
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 1.9e-42 179.9 483 29.8
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 2.5e-42 179.5 483 29.8
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 2.5e-42 179.5 480 30.6
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 4.3e-42 178.7 477 29.8
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 5.6e-42 178.3 478 32.0
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 7.3e-42 177.9 479 29.9
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 7.3e-42 177.9 485 30.7
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 7.3e-42 177.9 477 28.9
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 1.2e-41 177.2 484 30.0
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 1.2e-41 177.2 484 30.0
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 1.6e-41 176.8 487 30.2
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 2.8e-41 176.0 480 29.2
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 3.6e-41 175.6 485 29.7
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 4.7e-41 175.3 475 29.5
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 4.7e-41 175.3 483 28.8
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.1e-40 174.1 482 29.0
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.1e-40 174.1 482 29.0
ClCG09G008530 Citrullus lanatus HOM05D001937 ORTHO05D003828 1.1e-40 174.1 493 29.6
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.1e-40 174.1 486 29.6
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 1.1e-40 174.1 484 30.2
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 1.1e-40 174.1 481 29.5
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 1.4e-40 173.7 486 29.6
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.4e-40 173.7 486 29.6
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 1.4e-40 173.7 485 29.7
FAN23G0892 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.3e-40 172.9 486 29.6
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 2.3e-40 172.9 482 29.0
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 2.3e-40 172.9 481 29.9
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 3.1e-40 172.6 482 29.0
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 3.1e-40 172.6 483 29.2
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 3.1e-40 172.6 487 28.1
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 4.0e-40 172.2 491 29.3
HPP92_017203 Vanilla planifolia HOM05D001937 ORTHO05D003828 5.2e-40 171.8 429 30.8
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 6.8e-40 171.4 477 29.1
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 8.9e-40 171.0 491 29.1
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 8.9e-40 171.0 492 29.9
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 1.5e-39 170.2 479 28.0
AagrBONN_evm.TU.Sc2ySwM_117.3403 Anthoceros agrestis HOM05D001937 ORTHO05D003828 1.5e-39 170.2 483 28.6
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 1.5e-39 170.2 483 29.2
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 2.0e-39 169.9 483 29.4
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 2.0e-39 169.9 483 28.8
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 2.0e-39 169.9 483 28.6
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 2.6e-39 169.5 485 31.3
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 2.6e-39 169.5 490 29.6
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 3.4e-39 169.1 483 29.8
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 4.4e-39 168.7 487 29.0
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 5.8e-39 168.3 480 27.9
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 7.5e-39 167.9 488 29.7
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 9.9e-39 167.5 480 27.7
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 9.9e-39 167.5 475 29.1
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 1.3e-38 167.2 483 29.2
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 1.7e-38 166.8 490 29.8
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 2.2e-38 166.4 480 27.7
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 2.2e-38 166.4 483 29.4
PRCOL_00000485 Prasinoderma coloniale HOM05D001937 ORTHO05D003828 2.2e-38 166.4 505 29.1
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 2.2e-38 166.4 480 27.5
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 2.2e-38 166.4 482 28.0
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 2.9e-38 166.0 502 27.9
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 2.9e-38 166.0 480 27.7
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 8.3e-38 164.5 481 27.9
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 1.1e-37 164.1 491 27.7
Os06g0645800 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 2.4e-37 162.9 459 28.5
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 3.2e-37 162.5 488 28.3
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 3.2e-37 162.5 483 28.4
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 5.4e-37 161.8 482 28.4
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 9.2e-37 161.0 477 29.1
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 9.2e-37 161.0 485 28.0
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 9.2e-37 161.0 481 27.2
Atru.chr3.3791 Acer truncatum HOM05D001937 ORTHO05D003828 1.2e-36 160.6 481 28.9
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 2.7e-36 159.5 549 27.9
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 3.5e-36 159.1 481 28.5
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 3.5e-36 159.1 497 28.6
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 6.0e-36 158.3 483 28.0
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.0e-35 157.5 490 27.8
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 1.7e-35 156.8 484 27.7
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 3.0e-35 156.0 482 26.6
Cpa.g.sc177.20 Carica papaya HOM05D001937 ORTHO05D003828 3.0e-35 156.0 468 28.6
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 3.0e-35 156.0 483 27.5
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 3.0e-35 156.0 484 28.7
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 3.9e-35 155.6 484 26.7
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 6.6e-35 154.8 482 26.3
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 6.6e-35 154.8 482 26.3
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 6.6e-35 154.8 482 26.3
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 6.6e-35 154.8 637 25.4
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 8.6e-35 154.5 481 28.5
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 1.5e-34 153.7 498 28.9
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 3.3e-34 152.5 509 26.3
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 5.6e-34 151.8 483 27.3
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 9.5e-34 151.0 483 26.9
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 2.8e-33 149.4 486 27.6
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 8.1e-33 147.9 481 27.7
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 2.4e-32 146.4 438 27.9
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 3.1e-32 146.0 481 26.8
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 3.1e-32 146.0 483 26.5
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 1.2e-31 144.1 483 26.9
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 1.2e-31 144.1 483 26.9
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 1.2e-31 144.1 483 26.9
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 1.5e-31 143.7 483 26.3
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 1.5e-31 143.7 483 26.9
CARHR094480 Cardamine hirsuta HOM05D001937 ORTHO05D003828 9.9e-31 141.0 467 27.0
SMO118G0440 Selaginella moellendorffii HOM05D001937 ORTHO05D003828 1.7e-30 140.2 400 28.0
Aqoxy3G01594 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.2e-30 139.8 461 29.1
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 2.4e-29 136.3 485 27.2
CDE08G0555 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 7.1e-29 134.8 419 28.6
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 1.6e-28 133.7 562 24.4
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 6.0e-28 131.7 483 26.1
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.7e-27 130.2 488 26.2
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 1.3e-25 124.0 358 29.9
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.4e-24 120.6 339 29.5
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 1.8e-24 120.2 342 29.2
Cre10.g425501 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D003828 5.3e-24 118.6 518 24.3
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 3.8e-22 112.5 342 28.7
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 1.3e-19 104.0 535 26.9
SEGI_36763 Sequoiadendron giganteum HOM05D001937 ORTHO05D000001 1.7e-19 103.6 169 33.7
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 6.6e-19 101.7 324 25.9
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 1.9e-13 83.6 121 38.0
RcHm_v2.0_Chr5g0013491 Rosa chinensis HOM05D001937 ORTHO05D003828 2.4e-08 66.6 134 34.3
MD11G1215500 Malus domestica HOM05D001078 ORTHO05D000927 7.6e-07 61.6 163 28.8
Medtr5g093070 Medicago truncatula HOM05D001078 ORTHO05D000927 1.3e-06 60.8 205 27.8
SEGI_20322 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 1.3e-06 60.8 128 33.6
Ciclev10018558m.g Citrus clementina HOM05D000070 ORTHO05D005931 2.2e-06 60.1 76 35.5
FAN21G3055 Fragaria x ananassa HOM05D001937 ORTHO05D003828 2.2e-06 60.1 115 39.1
Manes.04G042700 Manihot esculenta HOM05D000070 ORTHO05D005931 2.9e-06 59.7 73 35.6
Dinv22255 Davidia involucrata HOM05D001078 ORTHO05D000927 3.8e-06 59.3 153 30.1
LjContig00272g0005281 Lotus japonicus HOM05D001078 ORTHO05D000927 3.8e-06 59.3 170 27.6
Phvul.011G054900 Phaseolus vulgaris HOM05D000070 ORTHO05D005931 3.8e-06 59.3 73 35.6
Rhsim06G0218500 Rhododendron simsii HOM05D001078 ORTHO05D000927 3.8e-06 59.3 160 29.4
TWI15G0144 Tripterygium wilfordii HOM05D000070 ORTHO05D005931 3.8e-06 59.3 73 35.6
CDE08G1500 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 4.9e-06 58.9 127 33.9
Glyma.12G052800 Glycine max HOM05D000070 ORTHO05D005931 4.9e-06 58.9 73 34.2
Potri.007G127900 Populus trichocarpa HOM05D000070 ORTHO05D005931 4.9e-06 58.9 73 35.6
Potri.017G030900 Populus trichocarpa HOM05D000070 ORTHO05D005931 4.9e-06 58.9 73 35.6
Gohir.A02G015301 Gossypium hirsutum HOM05D000070 ORTHO05D005931 6.4e-06 58.5 73 35.6
Gohir.A04G014100 Gossypium hirsutum HOM05D001078 ORTHO05D000927 6.4e-06 58.5 170 26.5
SEGI_35630 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 6.4e-06 58.5 119 32.8
Glyma.11G128300 Glycine max HOM05D000070 ORTHO05D005931 8.4e-06 58.2 73 34.2
Os09g0515100 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D005931 8.4e-06 58.2 76 35.5
Sabra07G0104200 Salix brachista HOM05D000070 ORTHO05D005931 8.4e-06 58.2 145 26.9
Sabra17G0020000 Salix brachista HOM05D000070 ORTHO05D005931 8.4e-06 58.2 73 35.6
TPR.G34234 Trifolium pratense HOM05D000070 ORTHO05D005931 8.4e-06 58.2 73 34.2


User provided reference genes

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