Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G089 Micromonas commoda HOM05D005361 ORTHO05D006518 0.0e+00 2216.4 1228 100.0
PRCOL_00002312 Prasinoderma coloniale HOM05D005361 ORTHO05D006518 8.1e-47 193.7 882 28.1
Cre02.g083900 Chlamydomonas reinhardtii HOM05D005361 ORTHO05D006518 4.2e-27 128.3 438 27.6
Mapoly0133s0016 Marchantia polymorpha HOM05D006088 ORTHO05D007281 4.8e-15 88.2 167 34.7
Mapoly0054s0112 Marchantia polymorpha HOM05D005361 ORTHO05D006518 4.1e-14 85.1 327 28.4
ECA234G3067 Erigeron canadensis HOM05D005361 ORTHO05D006518 1.5e-13 83.2 321 28.0
PRCOL_00005854 Prasinoderma coloniale HOM05D005361 ORTHO05D007281 2.0e-13 82.8 221 33.9
Lsat_1_v5_gn_5_102760 Lactuca sativa HOM05D005361 ORTHO05D006518 7.7e-13 80.9 311 27.3
CiPaw.07G027300 Carya illinoinensis HOM05D005361 ORTHO05D006518 1.7e-12 79.7 319 27.0
Psat0s1118g0080 Pisum sativum HOM05D005361 ORTHO05D006518 1.7e-12 79.7 332 26.8
HanXRQChr10g0299251 Helianthus annuus HOM05D005361 ORTHO05D006518 2.2e-12 79.3 323 27.9
PSO170G3617 Papaver somniferum HOM05D005361 ORTHO05D006518 2.2e-12 79.3 311 26.4
PSO357G0277 Papaver somniferum HOM05D005361 ORTHO05D006518 6.5e-12 77.8 311 26.4
Rhsim11G0093500 Rhododendron simsii HOM05D005361 ORTHO05D006518 6.5e-12 77.8 319 27.0
MBI18_g24951_MAGBIO Magnolia biondii HOM05D005361 ORTHO05D006518 8.5e-12 77.4 313 26.8
ATR0706G045 Amborella trichopoda HOM05D005361 ORTHO05D006518 1.1e-11 77.0 318 27.4
TAR362G0767 Trochodendron aralioides HOM05D005361 ORTHO05D006518 1.1e-11 77.0 321 25.5
DCAR_014551 Daucus carota HOM05D006088 ORTHO05D007281 1.4e-11 76.6 170 33.5
Solyc01g100270.4 Solanum lycopersicum HOM05D005361 ORTHO05D006518 1.4e-11 76.6 319 27.0
TWI56G0631 Tripterygium wilfordii HOM05D005361 ORTHO05D006518 2.5e-11 75.9 403 26.1
PSO063G3091 Papaver somniferum HOM05D006088 ORTHO05D007281 3.2e-11 75.5 174 33.3
Sopen01g043780 Solanum pennellii HOM05D005361 ORTHO05D006518 3.2e-11 75.5 319 26.6
DCAR_005413 Daucus carota HOM05D005361 ORTHO05D006518 4.2e-11 75.1 404 24.0
Lj5g0026434 Lotus japonicus HOM05D006088 ORTHO05D007281 7.2e-11 74.3 171 32.7
RcHm_v2.0_Chr3g0456811 Rosa chinensis HOM05D005361 ORTHO05D006518 7.2e-11 74.3 319 27.0
SalBow3G1325 Salvia bowleyana HOM05D005361 ORTHO05D006518 7.2e-11 74.3 319 27.6
Thecc.05G320500 Theobroma cacao HOM05D005361 ORTHO05D006518 7.2e-11 74.3 311 26.4
HPP92_001070 Vanilla planifolia HOM05D005361 ORTHO05D006518 9.4e-11 73.9 321 27.7
Ah.06g189010 Amaranthus hybridus HOM05D005361 ORTHO05D006518 1.2e-10 73.6 321 27.1
Cpa.g.sc48.138 Carica papaya HOM05D005361 ORTHO05D006518 1.2e-10 73.6 321 26.8
TPR.G2615 Trifolium pratense HOM05D005361 ORTHO05D006518 1.2e-10 73.6 319 27.0
Ca_10160_v3 Cicer arietinum L. HOM05D005361 ORTHO05D006518 1.6e-10 73.2 319 27.0
Glyma.14G150400 Glycine max HOM05D006088 ORTHO05D007281 1.6e-10 73.2 173 33.5
Phvul.001G074500 Phaseolus vulgaris HOM05D006088 ORTHO05D007281 1.6e-10 73.2 173 33.5
PRCOL_00006842 Prasinoderma coloniale HOM05D005361 ORTHO05D006518 1.6e-10 73.2 232 27.6
Carub.0002s0785 Capsella rubella HOM05D005361 ORTHO05D006518 2.1e-10 72.8 310 27.4
Lalb_Chr04g0253281 Lupinus albus HOM05D006088 ORTHO05D007281 2.7e-10 72.4 174 29.9
MSTRG.27959 Avicennia marina HOM05D005361 ORTHO05D006518 3.6e-10 72.0 321 26.8
EL10Ac3g05241 Beta vulgaris HOM05D006088 ORTHO05D007281 3.6e-10 72.0 165 32.1
CARHR289850 Cardamine hirsuta HOM05D005361 ORTHO05D006518 3.6e-10 72.0 317 27.1
FAN08G1915 Fragaria x ananassa HOM05D005361 ORTHO05D006518 3.6e-10 72.0 311 26.4
Nn3g21622 Nelumbo nucifera HOM05D005361 ORTHO05D006518 3.6e-10 72.0 322 27.0
Nitab4.5_0006072g0040 Nicotiana tabacum HOM05D005361 ORTHO05D006518 3.6e-10 72.0 301 25.9
Pp3c11_25950 Physcomitrium patens HOM05D006088 ORTHO05D007281 4.6e-10 71.6 167 31.7
Nitab4.5_0000368g0310 Nicotiana tabacum HOM05D005361 ORTHO05D006518 6.1e-10 71.2 223 28.3
CiPaw.08G157000 Carya illinoinensis HOM05D005361 ORTHO05D006518 7.9e-10 70.9 319 25.4
Migut.N02108 Erythranthe guttata HOM05D005361 ORTHO05D006518 7.9e-10 70.9 340 26.8
PGR083G2525 Punica granatum HOM05D005361 ORTHO05D006518 1.0e-09 70.5 230 25.7
vmacro01549 Vaccinium macrocarpon HOM05D005361 ORTHO05D006518 1.0e-09 70.5 336 25.0
Duzib177G0912 Durio zibethinus HOM05D005361 ORTHO05D006518 1.4e-09 70.1 318 25.2
Oeu037044.1 Olea europaea HOM05D006088 ORTHO05D007281 1.4e-09 70.1 176 30.7
AUR62035569 Chenopodium quinoa HOM05D006088 ORTHO05D007281 1.8e-09 69.7 165 31.5
MCO13G281 Micromonas commoda HOM05D005361 ORTHO05D270491 1.8e-09 69.7 275 30.2
Prupe.6G315500 Prunus persica HOM05D005361 ORTHO05D006518 1.8e-09 69.7 310 25.2
Hund07131 Selenicereus undatus HOM05D005361 ORTHO05D006518 1.8e-09 69.7 319 26.3
FvH4_5g34880 Fragaria vesca HOM05D005361 ORTHO05D006518 3.0e-09 68.9 311 26.7
FvH4_6g07170 Fragaria vesca HOM05D005361 ORTHO05D006518 3.9e-09 68.6 313 26.2
FAN14G4398 Fragaria x ananassa HOM05D005361 ORTHO05D006518 3.9e-09 68.6 313 26.2
Lj5g0016289 Lotus japonicus HOM05D005361 ORTHO05D006518 3.9e-09 68.6 311 26.4
SGA_v2.0_scaffold80G25882 Striga asiatica HOM05D005361 ORTHO05D006518 3.9e-09 68.6 299 27.1
Gohir.D13G114500 Gossypium hirsutum HOM05D005361 ORTHO05D006518 5.1e-09 68.2 342 25.4
MCO08G054 Micromonas commoda HOM05D005361 ORTHO05D006518 5.1e-09 68.2 111 36.9
Os05g0357100 Oryza sativa ssp. japonica HOM05D005361 ORTHO05D006518 5.1e-09 68.2 339 25.7
Os07g0452400 Oryza sativa ssp. japonica HOM05D006088 ORTHO05D007281 5.1e-09 68.2 165 31.5
FAN05G4787 Fragaria x ananassa HOM05D005361 ORTHO05D006518 6.7e-09 67.8 313 26.5
Gorai.013G128600 Gossypium raimondii HOM05D005361 ORTHO05D006518 6.7e-09 67.8 342 25.4
Lj9A208G25 Lonicera japonica HOM05D005361 ORTHO05D006518 6.7e-09 67.8 318 25.5
Oeu053699.1 Olea europaea HOM05D005361 ORTHO05D006518 6.7e-09 67.8 334 26.3
Atru.chr2.142 Acer truncatum HOM05D005361 ORTHO05D006518 8.8e-09 67.4 310 25.2
Aqoxy6G02436 Aquilegia oxysepala HOM05D005361 ORTHO05D006518 8.8e-09 67.4 315 25.4
CAN.G1273.4 Capsicum annuum HOM05D005361 ORTHO05D006518 8.8e-09 67.4 240 27.5
CsaV3_1G038340 Cucumis sativus L. HOM05D005361 ORTHO05D006518 8.8e-09 67.4 321 25.5
Phvul.007G200000 Phaseolus vulgaris HOM05D005361 ORTHO05D006518 8.8e-09 67.4 326 27.6
AagrBONN_evm.TU.Sc2ySwM_117.2926 Anthoceros agrestis HOM05D006088 ORTHO05D007281 1.1e-08 67.0 125 36.0
CSS0043675 Camellia sinensis var. sinensis HOM05D005361 ORTHO05D006518 1.1e-08 67.0 319 25.7
MD12G1208000 Malus domestica HOM05D005361 ORTHO05D006518 1.1e-08 67.0 313 25.6
PGSC0003DMG400002810 Solanum tuberosum HOM05D005361 ORTHO05D006518 1.1e-08 67.0 223 27.4
Zm00001eb347420 Zea mays HOM05D005361 ORTHO05D006518 1.1e-08 67.0 319 25.4
Actinidia35531 Actinidia chinensis HOM05D005361 ORTHO05D006518 2.0e-08 66.2 402 24.4
Gohir.A13G111600 Gossypium hirsutum HOM05D005361 ORTHO05D006518 2.0e-08 66.2 342 24.6
GSVIVG01031212001 Vitis vinifera HOM05D005361 ORTHO05D006518 2.0e-08 66.2 319 25.1
MD04G1195700 Malus domestica HOM05D005361 ORTHO05D006518 2.5e-08 65.9 310 25.5
AUR62006059 Chenopodium quinoa HOM05D006088 ORTHO05D007281 3.3e-08 65.5 160 31.2
Lalb_Chr02g0147921 Lupinus albus HOM05D005361 ORTHO05D006518 3.3e-08 65.5 312 26.6
RcHm_v2.0_Chr7g0235801 Rosa chinensis HOM05D005361 ORTHO05D006518 3.3e-08 65.5 313 26.2
A09p19140 Brassica napus HOM05D005361 ORTHO05D006518 4.3e-08 65.1 312 27.9
BraA09t37532Z Brassica rapa HOM05D005361 ORTHO05D006518 4.3e-08 65.1 312 27.9
CANSAT54G2643 Cannabis sativa HOM05D005361 ORTHO05D006518 4.3e-08 65.1 403 24.6
CBR_g47086 Chara braunii HOM05D005361 ORTHO05D006518 4.3e-08 65.1 361 27.4
ClCG03G017650 Citrullus lanatus HOM05D005361 ORTHO05D006518 5.7e-08 64.7 317 24.9
Haze_04086 Corylus avellana HOM05D005361 ORTHO05D006518 5.7e-08 64.7 326 26.1
Thhalv10023373m.g Eutrema salsugineum HOM05D005361 ORTHO05D006518 5.7e-08 64.7 312 25.6
Glyma.20G239300 Glycine max HOM05D005361 ORTHO05D006518 5.7e-08 64.7 325 25.5
C09p24140 Brassica napus HOM05D005361 ORTHO05D006518 7.4e-08 64.3 312 27.6
BolC9t55332H Brassica oleracea HOM05D005361 ORTHO05D006518 7.4e-08 64.3 312 27.6
Actinidia16846 Actinidia chinensis HOM05D005361 ORTHO05D006518 9.7e-08 63.9 209 27.3
BcaB07g31118 Brassica carinata HOM05D005361 ORTHO05D006518 9.7e-08 63.9 312 26.9
Sed0027360 Sechium edule HOM05D005361 ORTHO05D006518 9.7e-08 63.9 315 25.1
Manes.08G112700 Manihot esculenta HOM05D005361 ORTHO05D006518 1.3e-07 63.5 319 26.0
QL03p018132 Quercus lobata HOM05D005361 ORTHO05D006518 1.3e-07 63.5 320 24.7
Sp2g06550 Schrenkiella parvula HOM05D005361 ORTHO05D006518 1.3e-07 63.5 323 25.7
MELO3C015263.2 Cucumis melo HOM05D005361 ORTHO05D006518 1.7e-07 63.2 316 25.9
Lj5C338G3 Lonicera japonica HOM05D005361 ORTHO05D006518 1.7e-07 63.2 349 24.6
AL1G65920 Arabidopsis lyrata HOM05D005361 ORTHO05D006518 2.2e-07 62.8 316 26.3
BcaC04g22042 Brassica carinata HOM05D005361 ORTHO05D006518 2.2e-07 62.8 312 27.2
FAN04G2120 Fragaria x ananassa HOM05D005361 ORTHO05D006518 2.2e-07 62.8 313 25.6
Potri.005G020000 Populus trichocarpa HOM05D005361 ORTHO05D006518 2.8e-07 62.4 403 23.6
Ciclev10000759m.g Citrus clementina HOM05D005361 ORTHO05D006518 3.7e-07 62.0 319 24.1
AT1G56310 Arabidopsis thaliana HOM05D005361 ORTHO05D006518 6.3e-07 61.2 319 26.6
CBR_g51519 Chara braunii HOM05D000019 ORTHO05D000353 6.3e-07 61.2 152 30.3
Glyma.13G078800 Glycine max HOM05D006088 ORTHO05D007281 6.3e-07 61.2 214 28.0
DCAR_025270 Daucus carota HOM05D005361 ORTHO05D006518 1.1e-06 60.5 92 35.9
SMO266G0077 Selaginella moellendorffii HOM05D006088 ORTHO05D007281 1.1e-06 60.5 54 48.1
THA.LOC104805911 Tarenaya hassleriana HOM05D005361 ORTHO05D006518 1.4e-06 60.1 321 25.5
Cc02_g34760 Coffea canephora HOM05D005361 ORTHO05D006518 1.8e-06 59.7 302 27.2
COL.COLO4_16809 Corchorus olitorius HOM05D006088 ORTHO05D007281 2.4e-06 59.3 45 55.6
arahy.Tifrunner.gnm1.ann1.W8KES2 Arachis hypogaea HOM05D006088 ORTHO05D007281 3.1e-06 58.9 103 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1952 Anthoceros agrestis HOM05D005361 ORTHO05D006518 4.1e-06 58.5 304 25.7
Cre10.g445150 Chlamydomonas reinhardtii HOM05D005361 ORTHO05D006518 4.1e-06 58.5 112 36.6
Migut.H01140 Erythranthe guttata HOM05D005361 ORTHO05D006518 5.3e-06 58.2 207 27.5
Glyma.10G148600 Glycine max HOM05D005361 ORTHO05D006518 6.9e-06 57.8 319 24.5
MCO07G154 Micromonas commoda HOM05D005361 ORTHO05D006518 6.9e-06 57.8 47 57.4
Peaxi162Scf00740g00327 Petunia axillaris HOM05D006088 ORTHO05D007281 6.9e-06 57.8 45 55.6
MELO3C019378.2 Cucumis melo HOM05D006088 ORTHO05D007281 9.1e-06 57.4 51 49.0
CsaV3_3G019690 Cucumis sativus L. HOM05D006088 ORTHO05D007281 9.1e-06 57.4 51 49.0
Solyc03g082850.3 Solanum lycopersicum HOM05D006088 ORTHO05D007281 9.1e-06 57.4 46 52.2


User provided reference genes

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