Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-99 366.3 177 100.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-77 293.5 148 95.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.1e-74 283.5 148 91.9
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.5e-74 283.1 148 90.5
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 3.3e-74 282.0 148 90.5
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 3.3e-74 282.0 154 88.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 3.3e-74 282.0 148 91.2
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 7.3e-74 280.8 148 90.5
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 7.3e-74 280.8 148 90.5
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 1.2e-73 280.0 148 90.5
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.2e-73 280.0 148 91.2
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 1.2e-73 280.0 148 90.5
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 1.2e-73 280.0 148 91.2
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 1.6e-73 279.6 148 90.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.6e-73 279.6 148 91.2
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.6e-73 279.6 148 90.5
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.6e-73 279.6 148 90.5
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.6e-73 279.6 148 90.5
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 1.6e-73 279.6 154 85.7
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 1.6e-73 279.6 148 89.9
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 1.6e-73 279.6 154 87.7
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 1.6e-73 279.6 148 90.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 2.8e-73 278.9 148 89.2
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 2.8e-73 278.9 148 89.2
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 3.6e-73 278.5 148 89.2
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.7e-73 278.1 148 89.2
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 8.0e-73 277.3 148 89.9
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 8.0e-73 277.3 148 90.5
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.0e-72 276.9 148 89.2
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 1.0e-72 276.9 148 89.9
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 1.0e-72 276.9 148 89.2
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.0e-72 276.9 148 87.8
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.4e-72 276.6 148 88.5
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 1.4e-72 276.6 148 88.5
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.4e-72 276.6 148 88.5
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.8e-72 276.2 148 87.8
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.8e-72 276.2 148 89.9
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 1.8e-72 276.2 148 89.9
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 3.1e-72 275.4 148 88.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 3.1e-72 275.4 148 89.2
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 5.2e-72 274.6 148 89.2
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 6.8e-72 274.2 148 87.8
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 8.9e-72 273.9 148 85.1
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.2e-71 273.5 148 89.2
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.5e-71 273.1 148 89.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 2.6e-71 272.3 148 87.8
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 2.6e-71 272.3 148 87.2
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.4e-71 271.9 148 87.2
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 3.4e-71 271.9 148 87.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 5.8e-71 271.2 148 86.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 7.5e-71 270.8 148 88.5
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 7.5e-71 270.8 148 86.5
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 7.5e-71 270.8 148 86.5
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 9.8e-71 270.4 148 85.8
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.8e-71 270.4 148 86.5
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 9.8e-71 270.4 148 85.8
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 1.3e-70 270.0 148 85.8
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 1.3e-70 270.0 148 87.2
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.7e-70 269.6 148 85.8
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.7e-70 269.6 148 85.8
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.7e-70 269.6 148 85.8
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 2.2e-70 269.2 148 87.2
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 2.2e-70 269.2 148 85.8
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 2.9e-70 268.9 148 85.1
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 2.9e-70 268.9 148 85.1
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 2.9e-70 268.9 148 85.1
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 2.9e-70 268.9 148 85.1
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 2.9e-70 268.9 148 85.1
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 2.9e-70 268.9 148 87.2
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 3.7e-70 268.5 148 85.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 4.9e-70 268.1 148 85.8
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 4.9e-70 268.1 148 83.8
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 4.9e-70 268.1 148 84.5
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.4e-70 267.7 148 85.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 8.3e-70 267.3 148 86.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 8.3e-70 267.3 148 85.1
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 8.3e-70 267.3 148 86.5
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 8.3e-70 267.3 148 86.5
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.1e-69 266.9 148 83.1
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 2.4e-69 265.8 147 85.7
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 2.4e-69 265.8 147 85.7
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 2.4e-69 265.8 147 85.7
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 4.1e-69 265.0 148 84.5
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 4.1e-69 265.0 148 83.1
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.1e-69 265.0 148 82.4
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.1e-69 265.0 148 84.5
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 5.4e-69 264.6 148 83.8
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 5.4e-69 264.6 148 82.4
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.0e-69 264.2 148 84.5
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 9.2e-69 263.8 148 83.8
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.2e-68 263.5 148 81.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.2e-68 263.5 148 81.8
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 1.6e-68 263.1 148 83.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 1.6e-68 263.1 148 84.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 2.0e-68 262.7 148 83.1
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.5e-68 261.9 148 83.8
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.8e-68 260.8 148 83.8
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 1.3e-67 260.0 148 80.4
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.5e-66 256.5 148 81.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.9e-66 256.1 148 81.8
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 7.3e-66 254.2 148 81.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 6.2e-65 251.1 147 80.3
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 3.1e-64 248.8 164 72.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 4.9e-62 241.5 148 79.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 8.3e-62 240.7 147 74.1
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 8.3e-62 240.7 147 74.1
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.4e-61 239.2 194 63.4
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.4e-61 239.2 194 63.4
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.0e-59 233.8 170 67.6
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.7e-59 233.0 147 68.0
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.7e-59 233.0 148 73.6
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 5.6e-58 228.0 148 72.3
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.6e-57 226.5 188 64.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 6.4e-54 214.5 147 67.3
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.4e-53 213.4 151 69.5
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 9.2e-53 210.7 151 68.9
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 8.6e-51 204.1 223 50.7
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 9.6e-50 200.7 148 60.8
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 9.6e-50 200.7 147 59.9
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.1e-43 178.3 92 94.6
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.6e-33 146.7 153 47.1
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.1e-33 146.4 150 45.3
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.1e-33 146.4 133 47.4
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.4e-32 142.9 74 90.5
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 6.9e-32 141.4 147 53.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 3.8e-30 135.6 94 74.5
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 4.9e-30 135.2 88 62.5
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.1e-28 129.8 94 72.3
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.1e-28 129.8 94 72.3
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.9e-26 123.2 67 85.1
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.4e-24 116.3 65 83.1
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.4e-23 112.5 61 80.3
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.1e-21 107.5 57 84.2
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.9e-21 106.7 62 82.3
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.2e-20 104.0 54 81.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.5e-20 102.4 104 55.8
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 7.9e-20 101.3 69 73.9
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 5.1e-19 98.6 58 82.8
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.2e-15 87.4 64 62.5
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.5e-12 75.9 41 75.6
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.0e-11 72.8 39 87.2
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 6.7e-11 71.6 134 30.6
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 8.7e-11 71.2 39 82.1
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.4e-08 63.9 47 68.1


User provided reference genes

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