Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 0.0e+00 1313.9 693 100.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 4.7e-294 1014.2 572 85.5
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 2.2e-291 1005.4 663 76.0
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 5.0e-288 994.2 697 72.0
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.7e-283 979.2 572 81.1
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.1e-282 976.5 572 81.3
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.9e-282 975.7 572 81.1
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.3e-280 968.8 671 72.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.1e-279 966.5 576 78.8
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.2e-278 963.0 571 79.3
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.1e-277 959.9 639 73.1
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.4e-277 959.5 591 76.8
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.5e-276 956.1 661 71.6
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 3.4e-276 954.9 667 71.4
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 5.8e-276 954.1 638 71.9
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 7.5e-276 953.7 655 76.2
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 9.9e-276 953.4 652 71.6
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 9.9e-276 953.4 661 71.4
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 9.9e-276 953.4 638 72.1
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.7e-275 952.6 572 78.8
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 3.7e-275 951.4 566 79.2
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.4e-275 950.7 639 72.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 6.4e-275 950.7 568 79.2
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 1.9e-274 949.1 639 72.3
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.0e-272 943.3 571 78.5
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 3.9e-272 941.4 636 75.0
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.5e-271 939.5 635 72.8
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 6.2e-270 934.1 576 76.4
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 8.1e-270 933.7 669 71.3
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 5.2e-269 931.0 571 76.7
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 5.8e-268 927.5 573 77.1
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 6.4e-267 924.1 572 76.2
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 2.4e-266 922.2 658 68.5
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.2e-265 919.8 572 76.2
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 4.6e-265 917.9 571 75.3
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 7.8e-265 917.1 571 75.3
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.5e-263 912.9 565 76.3
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 7.3e-263 910.6 570 74.4
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.8e-261 906.0 657 67.6
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 5.2e-261 904.4 676 66.7
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 3.4e-260 901.7 672 66.7
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 7.6e-260 900.6 652 67.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 9.9e-260 900.2 567 76.0
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 9.9e-260 900.2 665 67.1
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 4.9e-259 897.9 657 67.3
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.4e-258 896.3 665 66.9
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.4e-258 896.3 571 74.3
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.9e-258 896.0 693 65.4
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.4e-258 895.6 643 71.5
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 6.0e-257 891.0 571 73.2
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.6e-254 882.9 614 67.4
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 2.1e-254 882.5 571 72.7
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 2.8e-254 882.1 566 73.3
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.3e-253 877.9 576 72.2
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 6.9e-253 877.5 639 66.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 6.9e-253 877.5 569 74.2
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 2.0e-252 875.9 581 72.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 3.4e-252 875.2 671 66.3
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 5.8e-252 874.4 653 67.4
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.9e-250 869.4 572 71.9
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 3.2e-250 868.6 572 71.7
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 7.1e-250 867.5 648 65.1
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.6e-249 866.3 571 73.4
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 4.6e-249 864.8 572 71.5
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 7.9e-249 864.0 572 71.5
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 7.9e-249 864.0 572 71.5
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 7.9e-249 864.0 572 71.5
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 7.9e-249 864.0 572 71.0
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 2.3e-248 862.4 571 73.0
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 6.7e-248 860.9 620 67.9
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 8.7e-248 860.5 611 69.2
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 2.5e-247 859.0 520 78.5
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 3.3e-247 858.6 680 64.7
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 7.4e-247 857.4 687 63.2
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 2.8e-246 855.5 659 64.8
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 1.8e-245 852.8 572 70.1
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 3.1e-245 852.0 572 70.1
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 4.0e-245 851.7 571 69.7
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.0e-245 851.7 712 61.7
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 6.9e-245 850.9 572 70.1
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.2e-244 850.1 596 68.8
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 7.6e-244 847.4 705 62.7
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.3e-243 846.7 632 68.2
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 4.9e-243 844.7 676 63.5
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 3.2e-242 842.0 675 63.4
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 4.2e-242 841.6 571 69.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 4.2e-242 841.6 673 67.3
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.2e-241 840.1 574 71.1
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.3e-240 836.6 644 68.6
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 3.9e-240 835.1 664 63.9
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.9e-239 832.8 587 67.3
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 4.0e-237 825.1 684 62.6
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.6e-236 822.4 495 78.6
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.9e-234 816.2 564 70.4
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 5.5e-234 814.7 670 63.0
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.6e-233 813.1 668 62.7
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.9e-231 806.2 654 62.1
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.4e-224 783.5 569 63.3
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.5e-223 780.0 567 66.8
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 8.5e-219 764.2 590 61.0
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.2e-214 749.6 726 55.9
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.1e-213 747.3 672 59.4
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.1e-213 745.3 648 59.4
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 9.4e-210 734.2 572 60.7
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.6e-209 733.4 571 62.7
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.6e-209 733.4 564 61.7
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.7e-207 724.2 567 63.1
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.9e-202 709.9 574 63.6
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 9.4e-202 707.6 571 62.5
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.4e-200 703.7 475 73.1
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.8e-200 703.4 527 62.6
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.3e-199 699.1 593 57.2
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.7e-196 689.5 507 65.7
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 2.7e-196 689.5 532 64.7
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.0e-192 675.6 429 74.1
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 8.8e-192 674.5 666 53.8
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.8e-192 674.5 596 58.7
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.3e-190 670.6 545 65.9
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.7e-190 670.2 429 73.9
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.7e-190 670.2 522 63.8
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.3e-187 659.8 681 53.5
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.2e-183 647.5 379 78.9
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.9e-179 632.5 490 63.1
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.9e-178 630.2 478 64.4
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.2e-177 627.5 427 69.1
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 2.8e-177 626.3 539 60.9
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.0e-172 610.1 566 55.7
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.1e-165 587.8 565 53.6
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.0e-159 567.0 652 48.9
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 9.9e-151 538.1 603 46.9
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 6.9e-144 515.4 519 53.9
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 3.2e-141 506.5 662 41.7
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.6e-140 504.2 424 58.7
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.2e-127 461.5 584 41.3
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 2.8e-121 440.3 608 40.5
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.5e-114 417.9 583 38.4
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.0e-107 395.2 414 51.0
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 3.7e-105 386.7 225 80.9
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.7e-97 361.3 273 63.0
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 2.6e-66 257.7 145 82.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.6e-63 248.4 145 79.3
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.3e-62 245.4 139 82.7
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.6e-62 243.0 125 90.4
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.9e-61 241.5 143 76.2
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.3e-61 240.4 143 75.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.2e-57 228.0 147 73.5
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.9e-56 224.9 145 72.4
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 3.7e-49 200.7 112 79.5
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.1e-48 199.1 143 66.4
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 1.0e-46 192.6 211 48.8
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 6.2e-44 183.3 113 76.1
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 8.9e-43 179.5 92 88.0
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.6e-38 163.3 90 85.6
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-35 156.0 79 84.8
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 4.9e-33 147.1 95 70.5
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-32 146.0 79 81.0
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-29 134.8 114 55.3
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 8.4e-25 119.8 143 47.6
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.9e-23 113.2 59 81.4
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 7.9e-23 113.2 85 60.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.4e-19 102.4 56 80.4
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.1e-16 92.8 43 93.0
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 8.7e-14 83.2 59 62.7
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.9e-13 82.0 50 68.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.6e-12 79.0 51 70.6
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.8e-12 77.4 44 75.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 2.4e-11 75.1 40 82.5
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 7.6e-10 70.1 44 72.7
Duzib187G1875 Durio zibethinus HOM05D003006 ORTHO05D003438 2.1e-07 62.0 258 26.7
QL05p027149 Quercus lobata HOM05D003006 ORTHO05D003438 2.7e-07 61.6 258 26.7
Gohir.A08G240000 Gossypium hirsutum HOM05D003006 ORTHO05D003438 3.5e-07 61.2 303 25.1
TAR636G2670 Trochodendron aralioides HOM05D003006 ORTHO05D003438 6.0e-07 60.5 253 26.9
ATR0716G019 Amborella trichopoda HOM05D003006 ORTHO05D003438 7.9e-07 60.1 258 27.1
RcHm_v2.0_Chr5g0013651 Rosa chinensis HOM05D003006 ORTHO05D003438 7.9e-07 60.1 266 22.6
CDE01G0326 Ceratophyllum demersum HOM05D003006 ORTHO05D003438 1.3e-06 59.3 253 26.5
Dinv38082 Davidia involucrata HOM05D003006 ORTHO05D003438 2.3e-06 58.5 258 25.6
RhsimUnG0046000 Rhododendron simsii HOM05D003006 ORTHO05D003438 3.0e-06 58.2 258 26.7
Duzib168G0422 Durio zibethinus HOM05D003006 ORTHO05D003438 3.9e-06 57.8 258 26.4
Ciclev10025975m.g Citrus clementina HOM05D003006 ORTHO05D003438 5.1e-06 57.4 258 27.5
DCAR_014855 Daucus carota HOM05D003006 ORTHO05D003438 5.1e-06 57.4 290 24.1
Gorai.010G066700 Gossypium raimondii HOM05D003006 ORTHO05D003438 5.1e-06 57.4 258 26.7
Gohir.D06G057000 Gossypium hirsutum HOM05D003006 ORTHO05D003438 6.7e-06 57.0 258 26.7
TAR625G1157 Trochodendron aralioides HOM05D003006 ORTHO05D003438 6.7e-06 57.0 258 26.4
Manes.06G050900 Manihot esculenta HOM05D003006 ORTHO05D003438 8.7e-06 56.6 258 26.4
Rhsim01G0088000 Rhododendron simsii HOM05D003006 ORTHO05D003438 8.7e-06 56.6 258 26.4
Thecc.09G119600 Theobroma cacao HOM05D003006 ORTHO05D003438 8.7e-06 56.6 258 26.4


User provided reference genes

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