Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g06829_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 3.7e-35 151.0 76 100.0
MBI19_g34717_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 3.8e-11 71.2 38 92.1
arahy.Tifrunner.gnm1.ann1.Z03QFY Arachis hypogaea HOM05D000104 ORTHO05D005604 7.1e-10 67.0 39 84.6
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 1.2e-09 66.2 37 89.2
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 2.1e-09 65.5 35 94.3
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 2.1e-09 65.5 35 94.3
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 2.1e-09 65.5 35 94.3
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 2.7e-09 65.1 35 94.3
Haze_01047 Corylus avellana HOM05D000104 ORTHO05D005604 2.7e-09 65.1 35 94.3
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 3.5e-09 64.7 35 94.3
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 3.5e-09 64.7 55 67.3
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 4.6e-09 64.3 35 91.4
arahy.Tifrunner.gnm1.ann1.N8S0IJ Arachis hypogaea HOM05D000104 ORTHO05D005604 7.8e-09 63.5 39 82.1
arahy.Tifrunner.gnm1.ann1.Q30CKZ Arachis hypogaea HOM05D000104 ORTHO05D005604 7.8e-09 63.5 39 82.1
Cfa015504 Carpinus fangiana HOM05D000104 ORTHO05D005604 7.8e-09 63.5 35 91.4
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 7.8e-09 63.5 35 91.4
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 7.8e-09 63.5 35 91.4
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 7.8e-09 63.5 43 74.4
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 7.8e-09 63.5 35 91.4
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 7.8e-09 63.5 35 91.4
arahy.Tifrunner.gnm1.ann1.E69ZFU Arachis hypogaea HOM05D000104 ORTHO05D005604 1.3e-08 62.8 38 84.2
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 1.3e-08 62.8 35 88.6
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 1.3e-08 62.8 35 91.4
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 1.7e-08 62.4 35 88.6
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 1.7e-08 62.4 35 91.4
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 1.7e-08 62.4 37 83.8
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 1.7e-08 62.4 33 93.9
TAR365G0556 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.7e-08 62.4 45 73.3
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 3.0e-08 61.6 35 85.7
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 3.0e-08 61.6 35 88.6
COL.COLO4_25219 Corchorus olitorius HOM05D000104 ORTHO05D005604 3.0e-08 61.6 36 91.7
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 3.0e-08 61.6 35 85.7
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 3.0e-08 61.6 35 85.7
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 3.0e-08 61.6 36 91.7
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 3.0e-08 61.6 33 93.9
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 3.0e-08 61.6 35 85.7
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 3.0e-08 61.6 35 88.6
arahy.Tifrunner.gnm1.ann1.TG6BII Arachis hypogaea HOM05D000181 ORTHO05D014369 3.9e-08 61.2 42 73.8
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 3.9e-08 61.2 35 85.7
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 3.9e-08 61.2 35 85.7
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 5.1e-08 60.8 35 88.6
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 6.6e-08 60.5 35 85.7
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 6.6e-08 60.5 34 85.3
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 6.6e-08 60.5 33 90.9
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 6.6e-08 60.5 35 82.9
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 6.6e-08 60.5 35 85.7
TPR.G14955 Trifolium pratense HOM05D029028 ORTHO05D030699 6.6e-08 60.5 36 83.3
Gohir.A09G233050 Gossypium hirsutum HOM05D000104 ORTHO05D005604 8.7e-08 60.1 34 85.3
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 8.7e-08 60.1 34 85.3
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 8.7e-08 60.1 34 85.3
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 8.7e-08 60.1 36 88.9
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 1.1e-07 59.7 35 85.7
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 1.1e-07 59.7 36 88.9
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 1.1e-07 59.7 35 82.9
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 1.1e-07 59.7 34 88.2
FAN07G2961 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.1e-07 59.7 34 88.2
FAN12G0301 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.1e-07 59.7 34 88.2
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.1e-07 59.7 34 88.2
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.1e-07 59.7 34 88.2
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.1e-07 59.7 36 88.9
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 1.1e-07 59.7 35 85.7
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 1.5e-07 59.3 34 82.4
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 1.5e-07 59.3 34 82.4
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 1.5e-07 59.3 34 82.4
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 1.5e-07 59.3 34 82.4
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 1.5e-07 59.3 34 82.4
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 1.5e-07 59.3 38 76.3
arahy.Tifrunner.gnm1.ann1.Q10S7I Arachis hypogaea HOM05D000104 ORTHO05D005604 1.9e-07 58.9 38 76.3
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 1.9e-07 58.9 35 85.7
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 2.5e-07 58.5 32 87.5
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 3.3e-07 58.2 36 86.1
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 3.3e-07 58.2 36 86.1
Os06g0255200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005604 3.3e-07 58.2 35 85.7
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 3.3e-07 58.2 35 82.9
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 3.3e-07 58.2 35 82.9
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 4.3e-07 57.8 34 79.4
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 4.3e-07 57.8 35 80.0
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 4.3e-07 57.8 34 85.3
arahy.Tifrunner.gnm1.ann1.0XZV5D Arachis hypogaea HOM05D000846 ORTHO05D001340 5.6e-07 57.4 38 78.9
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 5.6e-07 57.4 35 80.0
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 5.6e-07 57.4 35 80.0
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 5.6e-07 57.4 35 80.0
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 5.6e-07 57.4 35 80.0
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 5.6e-07 57.4 35 82.9
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 5.6e-07 57.4 35 80.0
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 9.6e-07 56.6 43 69.8
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 1.2e-06 56.2 35 80.0
Cc00_g33690 Coffea canephora HOM05D000104 ORTHO05D005604 1.2e-06 56.2 35 80.0
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 1.2e-06 56.2 35 80.0
Lj1A357G13 Lonicera japonica HOM05D000104 ORTHO05D005604 1.2e-06 56.2 35 80.0
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 1.2e-06 56.2 38 84.2
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 1.6e-06 55.8 35 80.0
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 1.6e-06 55.8 35 77.1
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 1.6e-06 55.8 35 77.1
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 3.6e-06 54.7 34 79.4
Nitab4.5_0004806g0040 Nicotiana tabacum HOM05D000455 ORTHO05D000434 8.1e-06 53.5 34 76.5


User provided reference genes

Program Settings