Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g31231_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D025791 2.4e-53 212.2 136 100.0
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.7e-22 109.8 66 84.8
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.7e-22 109.8 66 84.8
MBI16_g07738_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D005400 1.2e-15 87.0 47 91.5
MBI14_g18953_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D025791 1.5e-15 86.7 47 89.4
MBI17_g01629_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D000022 1.3e-14 83.6 50 84.0
TAR628G0869 Trochodendron aralioides HOM05D003387 ORTHO05D005400 3.2e-13 79.0 43 88.4
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 4.2e-13 78.6 43 86.0
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 4.2e-13 78.6 43 86.0
Sed0013690 Sechium edule HOM05D003387 ORTHO05D005400 5.5e-13 78.2 43 83.7
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 5.5e-13 78.2 43 88.4
MBI09_g02184_MAGBIO Magnolia biondii HOM05D003387 ORTHO05D025791 7.2e-13 77.8 43 86.0
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 7.2e-13 77.8 43 86.0
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 7.2e-13 77.8 43 86.0
ATR0115G003 Amborella trichopoda HOM05D003387 ORTHO05D005400 9.4e-13 77.4 47 80.9
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 9.4e-13 77.4 43 86.0
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 9.4e-13 77.4 44 81.8
TAR376G0277 Trochodendron aralioides HOM05D003387 ORTHO05D005400 1.2e-12 77.0 43 86.0
Atru.chr13.2064 Acer truncatum HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Cpa.g.sc49.99 Carica papaya HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Cc04_g09690 Coffea canephora HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Dinv25885 Davidia involucrata HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Eucgr.F02695 Eucalyptus grandis HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
FvH4_2g13280 Fragaria vesca HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
FAN20G0358 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
FAN24G3173 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
FAN27G0365 Fragaria x ananassa HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Glyma.10G223300 Glycine max HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Glyma.20G168400 Glycine max HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Lj5g0027187 Lotus japonicus HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
MD04G1044700 Malus domestica HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Nitab4.5_0010347g0020 Nicotiana tabacum HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Potri.002G066000 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Prupe.8G036700 Prunus persica HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
RcHm_v2.0_Chr6g0274691 Rosa chinensis HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 1.6e-12 76.6 43 83.7
Nitab4.5_0002445g0040 Nicotiana tabacum HOM05D003387 ORTHO05D005400 2.1e-12 76.3 43 81.4
Phvul.007G081900 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 2.1e-12 76.3 43 81.4
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.7e-12 75.9 43 83.7
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 3.6e-12 75.5 43 81.4
Haze_17786 Corylus avellana HOM05D003387 ORTHO05D005400 3.6e-12 75.5 43 81.4
Manes.02G181600 Manihot esculenta HOM05D003387 ORTHO05D005400 3.6e-12 75.5 43 81.4
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 3.6e-12 75.5 47 74.5
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 4.7e-12 75.1 43 83.7
SalBow1G1267 Salvia bowleyana HOM05D003387 ORTHO05D005400 4.7e-12 75.1 47 76.6
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
CANSAT25G0465 Cannabis sativa HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
AUR62026677 Chenopodium quinoa HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
AUR62040585 Chenopodium quinoa HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
DCAR_014445 Daucus carota HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Duzib093G0739 Durio zibethinus HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Duzib116G0668 Durio zibethinus HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Medtr1g098530 Medicago truncatula HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Sc16g0004050 Simmondsia chinensis HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
THA.LOC104804671 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Thecc.08G155500 Theobroma cacao HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 6.1e-12 74.7 43 81.4
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 7.9e-12 74.3 43 79.1
TWI34G1705 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 7.9e-12 74.3 47 74.5
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 1.0e-11 73.9 43 81.4
Lsat_1_v5_gn_9_41940 Lactuca sativa HOM05D003387 ORTHO05D005400 1.0e-11 73.9 43 81.4
Sopen12g010100 Solanum pennellii HOM05D003387 ORTHO05D005400 1.0e-11 73.9 43 79.1
PGSC0003DMG400018824 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.0e-11 73.9 43 79.1
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 1.0e-11 73.9 43 81.4
Migut.K00003 Erythranthe guttata HOM05D003387 ORTHO05D005400 1.4e-11 73.6 43 79.1
Solyc10g080720.2 Solanum lycopersicum HOM05D003387 ORTHO05D005400 1.4e-11 73.6 43 81.4
PGSC0003DMG400023660 Solanum tuberosum HOM05D003387 ORTHO05D005400 1.4e-11 73.6 43 81.4
Psat6g192160 Pisum sativum HOM05D003387 ORTHO05D005400 1.8e-11 73.2 43 81.4
TPR.G17034 Trifolium pratense HOM05D003387 ORTHO05D005400 1.8e-11 73.2 43 81.4
TPR.G28008 Trifolium pratense HOM05D003387 ORTHO05D005400 1.8e-11 73.2 43 79.1
TWI60G0696 Tripterygium wilfordii HOM05D003387 ORTHO05D005400 1.8e-11 73.2 43 79.1
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 1.8e-11 73.2 43 81.4
PSO170G1597 Papaver somniferum HOM05D003387 ORTHO05D005400 2.3e-11 72.8 40 87.5
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 2.3e-11 72.8 40 87.5
Peaxi162Scf00076g00821 Petunia axillaris HOM05D003387 ORTHO05D005400 2.3e-11 72.8 43 81.4
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 2.3e-11 72.8 43 81.4
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 3.0e-11 72.4 43 79.1
COL.COLO4_03566 Corchorus olitorius HOM05D003387 ORTHO05D005400 3.0e-11 72.4 43 79.1
Os01g0867800 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 3.0e-11 72.4 49 71.4
Zm00001eb348540 Zea mays HOM05D003387 ORTHO05D005400 3.0e-11 72.4 43 74.4
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 3.9e-11 72.0 43 79.1
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 3.9e-11 72.0 43 79.1
Medtr6g043520 Medicago truncatula HOM05D003387 ORTHO05D005400 3.9e-11 72.0 43 81.4
PGR042G1308 Punica granatum HOM05D003387 ORTHO05D005400 3.9e-11 72.0 43 79.1
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
Gohir.A02G063500 Gossypium hirsutum HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
Gohir.D02G069100 Gossypium hirsutum HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
Gorai.005G078200 Gossypium raimondii HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
Sopen10g031260 Solanum pennellii HOM05D003387 ORTHO05D005400 5.1e-11 71.6 43 79.1
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 6.7e-11 71.2 43 76.7
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 6.7e-11 71.2 43 76.7
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 6.7e-11 71.2 43 76.7
Actinidia10635 Actinidia chinensis HOM05D003387 ORTHO05D005400 8.8e-11 70.9 43 74.4
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 8.8e-11 70.9 43 79.1
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 8.8e-11 70.9 41 80.5
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 8.8e-11 70.9 43 76.7
Ah.02g123810 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.1e-10 70.5 43 79.1
Manes.18G093400 Manihot esculenta HOM05D003387 ORTHO05D005400 1.1e-10 70.5 43 76.7
CSS0039159 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 1.5e-10 70.1 43 79.1
AUR62017947 Chenopodium quinoa HOM05D003387 ORTHO05D138110 1.5e-10 70.1 43 76.7
Ca_04511_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.5e-10 70.1 43 76.7
HPP92_001089 Vanilla planifolia HOM05D003387 ORTHO05D021485 1.5e-10 70.1 43 74.4
AUR62003637 Chenopodium quinoa HOM05D003387 ORTHO05D005400 2.0e-10 69.7 43 76.7
EL10Ac6g15237 Beta vulgaris HOM05D003387 ORTHO05D005400 2.6e-10 69.3 43 76.7
Os05g0437300 Oryza sativa ssp. japonica HOM05D003387 ORTHO05D005400 2.6e-10 69.3 43 72.1
SGA_v2.0_scaffold274G46519 Striga asiatica HOM05D003387 ORTHO05D005400 2.6e-10 69.3 43 76.7
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 4.4e-10 68.6 43 76.7
ATR1126G056 Amborella trichopoda HOM05D003387 ORTHO05D005400 5.7e-10 68.2 43 74.4
Lalb_Chr02g0141481 Lupinus albus HOM05D003387 ORTHO05D005400 7.4e-10 67.8 43 74.4
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 9.7e-10 67.4 43 74.4
Ca_10675_v3 Cicer arietinum L. HOM05D003387 ORTHO05D005400 1.3e-09 67.0 43 74.4
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 3.7e-09 65.5 43 69.8
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 4.8e-09 65.1 43 69.8
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 8.2e-09 64.3 43 74.4
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 8.2e-09 64.3 43 72.1
Medtr6g037550 Medicago truncatula HOM05D003387 ORTHO05D005400 8.2e-09 64.3 43 69.8
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 2.4e-08 62.8 43 67.4
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 4.1e-08 62.0 44 65.9
Lj2g0008478 Lotus japonicus HOM05D003387 ORTHO05D005400 6.5e-06 54.7 31 80.6


User provided reference genes

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