Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g09536_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D020002 3.2e-80 302.0 185 100.0
MBI15_g16939_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D020002 3.2e-16 89.4 115 53.0
MBI06_g27434_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D003397 6.1e-15 85.1 70 70.0
Gohir.D09G199700 Gossypium hirsutum HOM05D001184 ORTHO05D003397 4.4e-13 79.0 62 67.7
Gorai.006G223400 Gossypium raimondii HOM05D001184 ORTHO05D003397 4.4e-13 79.0 62 67.7
MBI03_g42549_MAGBIO Magnolia biondii HOM05D001184 ORTHO05D003397 4.4e-13 79.0 85 56.5
TAR362G0810 Trochodendron aralioides HOM05D001184 ORTHO05D003397 4.4e-13 79.0 64 67.2
Gohir.A09G206100 Gossypium hirsutum HOM05D001184 ORTHO05D003397 5.7e-13 78.6 62 66.1
Lsat_1_v5_gn_2_46341 Lactuca sativa HOM05D001184 ORTHO05D003397 5.7e-13 78.6 64 64.1
Dinv38206 Davidia involucrata HOM05D001184 ORTHO05D003397 9.8e-13 77.8 64 64.1
Ciclev10004343m.g Citrus clementina HOM05D001184 ORTHO05D003397 1.3e-12 77.4 62 67.7
CiPaw.03G146700 Carya illinoinensis HOM05D001184 ORTHO05D003397 1.7e-12 77.0 62 66.1
Nitab4.5_0000366g0090 Nicotiana tabacum HOM05D001184 ORTHO05D003397 4.8e-12 75.5 64 62.5
PSO339G2903 Papaver somniferum HOM05D001184 ORTHO05D003397 4.8e-12 75.5 74 58.1
Haze_24834 Corylus avellana HOM05D001184 ORTHO05D003397 6.3e-12 75.1 73 57.5
Sc13g0000260 Simmondsia chinensis HOM05D001184 ORTHO05D003397 6.3e-12 75.1 71 60.6
EL10Ac3g07475 Beta vulgaris HOM05D001184 ORTHO05D003397 8.3e-12 74.7 48 77.1
Nitab4.5_0002889g0080 Nicotiana tabacum HOM05D001184 ORTHO05D003397 8.3e-12 74.7 62 62.9
Thecc.04G199200 Theobroma cacao HOM05D001184 ORTHO05D003397 8.3e-12 74.7 58 67.2
Aqoxy5G03290 Aquilegia oxysepala HOM05D001184 ORTHO05D003397 1.1e-11 74.3 62 62.9
Cfa002591 Carpinus fangiana HOM05D001184 ORTHO05D003397 1.1e-11 74.3 73 57.5
TAR633G0494 Trochodendron aralioides HOM05D001184 ORTHO05D003397 1.1e-11 74.3 73 58.9
PGSC0003DMG400028753 Solanum tuberosum HOM05D001184 ORTHO05D003397 1.4e-11 73.9 62 62.9
Actinidia31466 Actinidia chinensis HOM05D001184 ORTHO05D003397 1.8e-11 73.6 64 60.9
CSS0043546 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D003397 1.8e-11 73.6 48 75.0
AUR62018575 Chenopodium quinoa HOM05D001184 ORTHO05D003397 1.8e-11 73.6 62 59.7
Haze_24837 Corylus avellana HOM05D001184 ORTHO05D003397 1.8e-11 73.6 73 56.2
DCAR_023870 Daucus carota HOM05D001184 ORTHO05D003397 1.8e-11 73.6 47 76.6
HanXRQChr15g0488241 Helianthus annuus HOM05D001184 ORTHO05D003397 1.8e-11 73.6 70 60.0
Nitab4.5_0002365g0060 Nicotiana tabacum HOM05D001184 ORTHO05D003397 1.8e-11 73.6 62 61.3
Oeu049043.1 Olea europaea HOM05D001184 ORTHO05D003397 1.8e-11 73.6 62 62.9
vmacro02776 Vaccinium macrocarpon HOM05D001184 ORTHO05D003397 1.8e-11 73.6 64 59.4
GSVIVG01020924001 Vitis vinifera HOM05D001184 ORTHO05D003397 1.8e-11 73.6 64 62.5
Ciclev10024095m.g Citrus clementina HOM05D001184 ORTHO05D003397 2.4e-11 73.2 62 62.9
Thhalv10024450m.g Eutrema salsugineum HOM05D001184 ORTHO05D003397 2.4e-11 73.2 47 78.7
Nitab4.5_0009377g0030 Nicotiana tabacum HOM05D001184 ORTHO05D003397 2.4e-11 73.2 62 61.3
PSO339G1617 Papaver somniferum HOM05D001184 ORTHO05D003397 2.4e-11 73.2 73 58.9
Potri.017G057700 Populus trichocarpa HOM05D001184 ORTHO05D003397 2.4e-11 73.2 64 64.1
QL09p052979 Quercus lobata HOM05D001184 ORTHO05D003397 2.4e-11 73.2 64 59.4
DCAR_026633 Daucus carota HOM05D001184 ORTHO05D003397 3.1e-11 72.8 62 64.5
QL09p052106 Quercus lobata HOM05D001184 ORTHO05D003397 3.1e-11 72.8 64 59.4
Sabra16G0200900 Salix brachista HOM05D001184 ORTHO05D003397 3.1e-11 72.8 62 62.9
Sopen07g004890 Solanum pennellii HOM05D001184 ORTHO05D003397 3.1e-11 72.8 62 61.3
Atru.chr13.1877 Acer truncatum HOM05D001184 ORTHO05D003397 4.1e-11 72.4 79 55.7
Duzib212G0797 Durio zibethinus HOM05D001184 ORTHO05D003397 4.1e-11 72.4 49 73.5
Duzib268G0787 Durio zibethinus HOM05D001184 ORTHO05D003397 4.1e-11 72.4 89 51.7
Migut.O00219 Erythranthe guttata HOM05D001184 ORTHO05D003397 4.1e-11 72.4 62 61.3
Oeu055765.1 Olea europaea HOM05D001184 ORTHO05D003397 4.1e-11 72.4 62 62.9
Peaxi162Scf00324g00227 Petunia axillaris HOM05D001184 ORTHO05D003397 4.1e-11 72.4 71 54.9
Sabra17G0050800 Salix brachista HOM05D001184 ORTHO05D003397 4.1e-11 72.4 64 60.9
MSTRG.4233 Avicennia marina HOM05D001184 ORTHO05D003397 5.4e-11 72.0 62 58.1
Manes.15G055300 Manihot esculenta HOM05D001184 ORTHO05D003397 5.4e-11 72.0 62 62.9
PSO384G1210 Papaver somniferum HOM05D001184 ORTHO05D003397 5.4e-11 72.0 64 62.5
Psat4g022000 Pisum sativum HOM05D001184 ORTHO05D003397 5.4e-11 72.0 58 67.2
PGR142G4368 Punica granatum HOM05D001184 ORTHO05D003397 5.4e-11 72.0 64 60.9
Phvul.011G020800 Phaseolus vulgaris HOM05D001184 ORTHO05D003397 7.0e-11 71.6 70 58.6
HPP92_023535 Vanilla planifolia HOM05D001184 ORTHO05D003397 7.0e-11 71.6 59 64.4
VMungo1127G0354 Vigna mungo HOM05D001184 ORTHO05D003397 7.0e-11 71.6 70 58.6
AUR62020841 Chenopodium quinoa HOM05D001184 ORTHO05D003397 9.1e-11 71.2 62 58.1
Eucgr.H00043 Eucalyptus grandis HOM05D001184 ORTHO05D003397 9.1e-11 71.2 64 60.9
Lsat_1_v5_gn_6_60760 Lactuca sativa HOM05D001184 ORTHO05D003397 9.1e-11 71.2 48 72.9
SalBow8G1842 Salvia bowleyana HOM05D001184 ORTHO05D003397 9.1e-11 71.2 49 73.5
SalBow8G3376 Salvia bowleyana HOM05D001184 ORTHO05D003397 9.1e-11 71.2 49 73.5
TWI12G1242 Tripterygium wilfordii HOM05D001184 ORTHO05D003397 9.1e-11 71.2 62 59.7
unitig_32.g10864 Utricularia gibba HOM05D001184 ORTHO05D003397 9.1e-11 71.2 62 59.7
Atru.chr4.1616 Acer truncatum HOM05D001184 ORTHO05D003397 1.2e-10 70.9 49 75.5
TWI18G0923 Tripterygium wilfordii HOM05D001184 ORTHO05D003397 1.2e-10 70.9 47 74.5
Cpa.g.sc8.130 Carica papaya HOM05D001184 ORTHO05D003397 1.6e-10 70.5 62 62.9
CDE08G1095 Ceratophyllum demersum HOM05D001184 ORTHO05D003397 1.6e-10 70.5 87 52.9
Ah.13g078060 Amaranthus hybridus HOM05D001184 ORTHO05D003397 2.0e-10 70.1 62 61.3
Dinv12661 Davidia involucrata HOM05D001184 ORTHO05D003397 2.0e-10 70.1 48 72.9
Lalb_Chr19g0139901 Lupinus albus HOM05D001184 ORTHO05D003397 2.0e-10 70.1 75 56.0
Hund18999 Selenicereus undatus HOM05D001184 ORTHO05D003397 2.0e-10 70.1 62 62.9
SGA_v2.0_scaffold163G38069 Striga asiatica HOM05D001184 ORTHO05D003397 2.0e-10 70.1 62 61.3
AT4G13780 Arabidopsis thaliana HOM05D001184 ORTHO05D003397 2.7e-10 69.7 62 59.7
Manes.13G048000 Manihot esculenta HOM05D001184 ORTHO05D003397 2.7e-10 69.7 59 59.3
Peaxi162Scf00423g00134 Petunia axillaris HOM05D001184 ORTHO05D003397 2.7e-10 69.7 62 59.7
Prupe.2G130800 Prunus persica HOM05D001184 ORTHO05D003397 2.7e-10 69.7 62 62.9
Actinidia29359 Actinidia chinensis HOM05D001184 ORTHO05D003397 3.5e-10 69.3 48 72.9
ATR0987G002 Amborella trichopoda HOM05D001184 ORTHO05D003397 3.5e-10 69.3 60 60.0
AL1G21770 Arabidopsis lyrata HOM05D001184 ORTHO05D003397 3.5e-10 69.3 64 57.8
AL7G42740 Arabidopsis lyrata HOM05D001184 ORTHO05D003397 3.5e-10 69.3 62 59.7
Hma1.2p1_0187F.1_g082410 Hydrangea macrophylla HOM05D001184 ORTHO05D003397 3.5e-10 69.3 64 57.8
Medtr4g122580 Medicago truncatula HOM05D001184 ORTHO05D003397 3.5e-10 69.3 58 65.5
Aa31LG9G3730 Aethionema arabicum HOM05D001184 ORTHO05D003397 4.5e-10 68.9 49 73.5
CDE06G0050 Ceratophyllum demersum HOM05D001184 ORTHO05D003397 4.5e-10 68.9 87 51.7
HPP92_020335 Vanilla planifolia HOM05D001184 ORTHO05D003397 4.5e-10 68.9 68 54.4
Aa31LG4G12540 Aethionema arabicum HOM05D001184 ORTHO05D003397 5.9e-10 68.6 49 71.4
Cpa.g.sc83.20 Carica papaya HOM05D001184 ORTHO05D003397 5.9e-10 68.6 49 73.5
Glyma.12G018400 Glycine max HOM05D001184 ORTHO05D003397 5.9e-10 68.6 58 63.8
Glyma.13G000200 Glycine max HOM05D001184 ORTHO05D003397 5.9e-10 68.6 58 62.1
Aa31LG9G3760 Aethionema arabicum HOM05D001184 ORTHO05D003397 7.7e-10 68.2 47 72.3
CSS0018170 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D003397 7.7e-10 68.2 49 71.4
CSS0036533 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D003397 7.7e-10 68.2 49 71.4
MELO3C020358.2 Cucumis melo HOM05D001184 ORTHO05D003397 7.7e-10 68.2 62 56.5
Lj7C738G14 Lonicera japonica HOM05D000109 ORTHO05D000210 7.7e-10 68.2 49 69.4
THA.LOC104808703 Tarenaya hassleriana HOM05D001184 ORTHO05D003397 7.7e-10 68.2 49 73.5
Zm00001eb400100 Zea mays HOM05D001184 ORTHO05D003397 7.7e-10 68.2 49 69.4
CAN.G305.8 Capsicum annuum HOM05D001184 ORTHO05D003397 1.0e-09 67.8 62 58.1
Psat7g142400 Pisum sativum HOM05D001184 ORTHO05D003397 1.0e-09 67.8 58 63.8
Psat7g171920 Pisum sativum HOM05D001184 ORTHO05D003397 1.0e-09 67.8 58 63.8
Potri.001G317500 Populus trichocarpa HOM05D001184 ORTHO05D003397 1.0e-09 67.8 49 71.4
TPR.G34293 Trifolium pratense HOM05D001184 ORTHO05D003397 1.0e-09 67.8 58 63.8
CAN.G246.2 Capsicum annuum HOM05D001184 ORTHO05D020002 1.7e-09 67.0 58 62.1
Ca_04924_v3 Cicer arietinum L. HOM05D001184 ORTHO05D003397 1.7e-09 67.0 58 62.1
Haze_03548 Corylus avellana HOM05D001184 ORTHO05D003397 1.7e-09 67.0 65 60.0
CsaV3_2G011140 Cucumis sativus L. HOM05D001184 ORTHO05D003397 1.7e-09 67.0 62 56.5
Nn3g19994 Nelumbo nucifera HOM05D001184 ORTHO05D003397 1.7e-09 67.0 59 59.3
Os10g0400100 Oryza sativa ssp. japonica HOM05D001184 ORTHO05D003397 1.7e-09 67.0 62 54.8
Rhsim02G0172200 Rhododendron simsii HOM05D001184 ORTHO05D003397 1.7e-09 67.0 67 58.2
THA.LOC104804806 Tarenaya hassleriana HOM05D001184 ORTHO05D003397 1.7e-09 67.0 49 71.4
TPR.G25404 Trifolium pratense HOM05D001184 ORTHO05D003397 1.7e-09 67.0 75 54.7
GSVIVG01038361001 Vitis vinifera HOM05D001184 ORTHO05D003397 1.7e-09 67.0 64 57.8
CANSAT01G1772 Cannabis sativa HOM05D001184 ORTHO05D003397 2.3e-09 66.6 115 41.7
Glyma.12G018300 Glycine max HOM05D001184 ORTHO05D003397 2.3e-09 66.6 58 62.1
Lalb_Chr01g0000971 Lupinus albus HOM05D001184 ORTHO05D003397 2.3e-09 66.6 85 50.6
MD05G1172700 Malus domestica HOM05D001184 ORTHO05D003397 2.3e-09 66.6 60 58.3
Nn1g07935 Nelumbo nucifera HOM05D001184 ORTHO05D003397 2.3e-09 66.6 69 59.4
Sed0003636 Sechium edule HOM05D001184 ORTHO05D003397 2.3e-09 66.6 62 54.8
ClCG06G008040 Citrullus lanatus HOM05D001184 ORTHO05D003397 2.9e-09 66.2 62 56.5
Lj3g0023242 Lotus japonicus HOM05D001184 ORTHO05D003397 2.9e-09 66.2 58 63.8
Sed0027305 Sechium edule HOM05D001184 ORTHO05D003397 2.9e-09 66.2 62 54.8
Cc03_g08090 Coffea canephora HOM05D001184 ORTHO05D003397 3.8e-09 65.9 62 59.7
HanXRQChr02g0059041 Helianthus annuus HOM05D001184 ORTHO05D003397 3.8e-09 65.9 70 52.9
Psat4g136360 Pisum sativum HOM05D001184 ORTHO05D003397 3.8e-09 65.9 54 63.0
Psat7g142560 Pisum sativum HOM05D001184 ORTHO05D003397 3.8e-09 65.9 58 62.1
FvH4_4g36103 Fragaria vesca HOM05D001184 ORTHO05D003397 5.0e-09 65.5 49 69.4
MD04G1013400 Malus domestica HOM05D001184 ORTHO05D003397 6.5e-09 65.1 46 69.6
Medtr4g077700 Medicago truncatula HOM05D001184 ORTHO05D003397 6.5e-09 65.1 58 60.3
Prupe.8G200100 Prunus persica HOM05D001184 ORTHO05D003397 6.5e-09 65.1 64 56.2
vmacro11026 Vaccinium macrocarpon HOM05D001184 ORTHO05D003397 6.5e-09 65.1 67 58.2
BcaC02g09391 Brassica carinata HOM05D001184 ORTHO05D003397 8.6e-09 64.7 47 68.1
A04p08440 Brassica napus HOM05D001184 ORTHO05D003397 8.6e-09 64.7 47 68.1
C04p42150 Brassica napus HOM05D001184 ORTHO05D003397 8.6e-09 64.7 47 68.1
BolC4t25796H Brassica oleracea HOM05D001184 ORTHO05D003397 8.6e-09 64.7 47 68.1
BraA04t16533Z Brassica rapa HOM05D001184 ORTHO05D003397 8.6e-09 64.7 47 68.1
CANSAT78G2277 Cannabis sativa HOM05D001184 ORTHO05D003397 8.6e-09 64.7 108 46.3
Oeu043455.1 Olea europaea HOM05D001184 ORTHO05D003397 8.6e-09 64.7 62 56.5
Oeu064520.1 Olea europaea HOM05D001184 ORTHO05D003397 8.6e-09 64.7 62 56.5
Zm00001eb008700 Zea mays HOM05D001184 ORTHO05D003397 8.6e-09 64.7 46 69.6
A08p06650 Brassica napus HOM05D001184 ORTHO05D003397 1.1e-08 64.3 47 68.1
FvH4_4g36101 Fragaria vesca HOM05D001184 ORTHO05D003397 1.1e-08 64.3 64 59.4
BraA08t32681Z Brassica rapa HOM05D001184 ORTHO05D003397 1.5e-08 63.9 47 70.2
Lj1A88G44 Lonicera japonica HOM05D001184 ORTHO05D003397 1.5e-08 63.9 62 54.8
Sp7g11570 Schrenkiella parvula HOM05D001184 ORTHO05D003397 1.5e-08 63.9 47 68.1
CARHR219660 Cardamine hirsuta HOM05D001184 ORTHO05D003397 1.9e-08 63.5 47 68.1
BcaB02g08652 Brassica carinata HOM05D001184 ORTHO05D003397 2.5e-08 63.2 58 58.6
SHI11900 Sapria himalayana HOM05D001184 ORTHO05D003397 3.2e-08 62.8 83 44.6
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 4.2e-08 62.4 47 61.7
SEGI_18693 Sequoiadendron giganteum HOM05D001184 ORTHO05D003397 4.2e-08 62.4 48 68.8
COL.COLO4_20192 Corchorus olitorius HOM05D001184 ORTHO05D003397 7.2e-08 61.6 62 56.5
Zm00001eb189910 Zea mays HOM05D001184 ORTHO05D003397 7.2e-08 61.6 58 58.6
Hma1.2p1_1125F.1_g259610 Hydrangea macrophylla HOM05D001184 ORTHO05D020002 9.5e-08 61.2 44 70.5
Carub.0007s2868 Capsella rubella HOM05D001184 ORTHO05D003397 1.2e-07 60.8 49 65.3
CiPaw.02G065500 Carya illinoinensis HOM05D001184 ORTHO05D003397 1.2e-07 60.8 65 56.9
QL10p064653 Quercus lobata HOM05D001184 ORTHO05D003397 1.6e-07 60.5 65 53.8
QL10p065779 Quercus lobata HOM05D001184 ORTHO05D003397 1.6e-07 60.5 65 53.8
RcHm_v2.0_Chr2g0166871 Rosa chinensis HOM05D001184 ORTHO05D003397 1.6e-07 60.5 49 65.3
FAN12G0873 Fragaria x ananassa HOM05D001184 ORTHO05D003397 3.6e-07 59.3 49 63.3
QL02p084624 Quercus lobata HOM05D001184 ORTHO05D003397 4.7e-07 58.9 65 52.3
ECA247G2182 Erigeron canadensis HOM05D001184 ORTHO05D003397 1.0e-06 57.8 49 63.3
CARHR054020 Cardamine hirsuta HOM05D001184 ORTHO05D003397 1.8e-06 57.0 47 59.6
Mapoly0045s0011 Marchantia polymorpha HOM05D001184 ORTHO05D003397 2.3e-06 56.6 47 61.7
CBR_g55333 Chara braunii HOM05D001184 ORTHO05D003397 4.0e-06 55.8 57 54.4
Hund21466 Selenicereus undatus HOM05D001184 ORTHO05D003397 4.0e-06 55.8 46 58.7


User provided reference genes

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