Gene: COL.COLO4_20192

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_20192
  • Transcript Identifier COL.rna18953
  • Gene Type Coding gene
  • Location AWUE01017045.1 : 21098-26519 : negative

Gene Family Information

  • ID HOM05D001184
  • #Genes/#Species 526/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna18953
  • GenBank OMO88585.1
  • id gene20164
  • gene_name COLO4_20192
  • uniprot A0A1R3J181

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006431
IEA
GOA Databasemethionyl-tRNA aminoacylation
GO:0006431
IEA
InterPromethionyl-tRNA aminoacylation
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT4G13780
GO:0006418
IEA
GOA DatabasetRNA aminoacylation for protein translation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006412
IEA
GOA Databasetranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000049
IEA
GOA DatabasetRNA binding
GO:0000049
IEA
InterProtRNA binding
GO:0004825
IEA
GOA Databasemethionine-tRNA ligase activity
GO:0004825
IEA
InterPromethionine-tRNA ligase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0016874
IEA
GOA Databaseligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G13780
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
IPR029038 Methionyl-tRNA synthetase, Zn-domain
IPR014758 Methionyl-tRNA synthetase
IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain
IPR002547 tRNA-binding domain
IPR015413 Methionyl/Leucyl tRNA synthetase
IPR033911 Methioninyl-tRNA synthetase core domain
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
17.2.14 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase