Gene: AT4G13780

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G13780
  • Transcript Identifier AT4G13780.1
  • Gene Type Coding gene
  • Location Chr4 : 7993366-7998433 : negative

Gene Family Information

  • ID HOM05D001184
  • #Genes/#Species 526/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G13780.1
  • uniprot Q9SVN5

Descriptions

  • Description methionine-tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS
  • Computational description methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; FUNCTIONS IN: methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, methionyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G40660.1); Has 17985 Blast hits to 17920 proteins in 2983 species: Archae - 503; Bacteria - 10276; Metazoa - 591; Fungi - 596; Plants - 228; Viruses - 3; Other Eukaryotes - 5788 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006431
IEA
Gene Ontologymethionyl-tRNA aminoacylation
GO:0006431
IEA
InterPromethionyl-tRNA aminoacylation
GO:0006418
IEA
GOA DatabasetRNA aminoacylation for protein translation
GO:0006418
IBA
Gene OntologytRNA aminoacylation for protein translation1
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0006412
IEA
GOA Databasetranslation
GO:0046686
IEP
GOA Databaseresponse to cadmium ion

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0000049
IEA
GOA DatabasetRNA binding
GO:0000049
IEA
InterProtRNA binding
GO:0004825
IEA
Gene Ontologymethionine-tRNA ligase activity
GO:0004825
IEA
InterPromethionine-tRNA ligase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0016874
IEA
GOA Databaseligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IDA
IEA
GOA Databasecytosol
GO:0005829
HDA
IBA
TAS
Gene Ontologycytosol1 2 3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015413 Methionyl/Leucyl tRNA synthetase
IPR033911 Methioninyl-tRNA synthetase core domain
IPR029038 Methionyl-tRNA synthetase, Zn-domain
IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR014758 Methionyl-tRNA synthetase
IPR012340 Nucleic acid-binding, OB-fold
IPR002547 tRNA-binding domain
IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain
Mapman id Description
17.2.14 Protein biosynthesis.aminoacyl-tRNA synthetase activities.methionine-tRNA ligase