Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 0.0e+00 1256.5 635 100.0
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 3.5e-235 818.5 559 76.7
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 5.2e-231 804.7 541 76.5
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 2.2e-229 799.3 502 81.1
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 3.7e-229 798.5 515 79.6
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 1.4e-228 796.6 517 77.9
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 1.8e-228 796.2 559 75.3
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 9.2e-228 793.9 508 79.5
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 1.1e-225 786.9 508 78.3
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.4e-223 780.0 492 79.9
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 6.8e-223 777.7 515 76.1
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 9.8e-222 773.9 505 77.8
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 4.9e-221 771.5 493 78.9
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 8.3e-221 770.8 518 76.3
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.8e-220 769.6 515 75.5
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 2.4e-220 769.2 512 77.0
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 5.4e-220 768.1 488 78.7
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 5.4e-220 768.1 512 77.9
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 7.0e-220 767.7 516 76.6
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 3.5e-219 765.4 514 75.7
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 3.5e-219 765.4 493 77.9
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 4.6e-219 765.0 498 79.3
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 7.8e-219 764.2 515 75.0
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 3.9e-218 761.9 510 76.5
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 3.9e-218 761.9 502 75.7
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 8.6e-218 760.8 496 77.0
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 4.3e-217 758.4 545 71.9
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 7.3e-217 757.7 613 66.9
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 1.2e-216 756.9 510 77.3
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 1.8e-215 753.1 482 79.3
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.8e-215 753.1 512 76.8
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 5.2e-215 751.5 512 76.6
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 5.2e-215 751.5 497 77.1
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 6.8e-215 751.1 511 76.3
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 8.9e-215 750.7 499 75.4
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 8.9e-215 750.7 494 76.5
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 1.2e-214 750.4 494 76.5
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.2e-214 750.4 540 72.0
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 2.0e-214 749.6 493 77.3
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 4.4e-214 748.4 496 74.8
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 4.4e-214 748.4 492 77.8
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.3e-213 746.9 494 76.3
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.4e-212 743.4 509 75.2
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 1.4e-212 743.4 482 77.2
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 1.9e-212 743.0 542 69.2
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 2.4e-212 742.7 493 75.7
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 2.4e-212 742.7 516 74.2
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 7.0e-212 741.1 500 75.2
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 7.0e-212 741.1 542 69.2
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 7.0e-212 741.1 516 74.2
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 7.0e-212 741.1 544 70.0
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 7.0e-212 741.1 518 73.0
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 9.2e-212 740.7 469 79.5
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 9.2e-212 740.7 503 73.4
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 1.2e-211 740.3 492 75.0
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 1.2e-211 740.3 491 75.2
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 1.6e-211 740.0 504 74.6
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 1.6e-211 740.0 508 75.4
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.0e-211 739.6 524 72.5
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 6.6e-210 734.6 487 75.4
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.9e-209 733.0 504 74.0
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 7.3e-209 731.1 492 75.2
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.6e-208 729.9 485 78.4
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 3.6e-208 728.8 511 71.8
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 8.1e-208 727.6 504 73.6
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 5.8e-206 721.5 504 73.4
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 6.4e-205 718.0 517 71.4
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 8.3e-205 717.6 489 72.8
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 8.3e-205 717.6 491 73.7
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 1.1e-204 717.2 488 72.5
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 1.4e-204 716.8 500 73.8
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 1.4e-204 716.8 511 70.1
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 5.4e-204 714.9 497 74.2
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 7.1e-204 714.5 492 72.8
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 1.2e-203 713.8 499 73.7
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.6e-203 713.4 514 72.2
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 4.6e-203 711.8 514 72.0
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 7.8e-203 711.1 500 73.0
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.0e-202 710.7 514 72.0
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 1.0e-202 710.7 499 71.9
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 3.9e-202 708.8 504 72.8
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 5.1e-202 708.4 495 71.9
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 8.6e-202 707.6 493 73.8
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 1.9e-201 706.4 498 73.1
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 3.3e-201 705.7 502 72.9
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 5.6e-201 704.9 516 71.3
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 9.5e-201 704.1 497 72.8
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.1e-199 699.1 506 70.9
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 8.4e-197 691.0 507 70.4
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.9e-196 689.9 476 73.9
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 3.2e-196 689.1 492 72.8
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 1.7e-194 683.3 573 65.3
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 2.3e-194 682.9 514 67.3
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 1.1e-193 680.6 438 77.9
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 4.7e-192 675.2 577 62.6
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 7.6e-190 667.9 554 64.1
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 2.3e-186 656.4 500 67.0
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 3.4e-182 642.5 632 56.6
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 1.1e-172 610.9 467 68.7
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 1.6e-171 607.1 489 61.8
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.3e-168 597.4 386 76.2
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 1.2e-163 580.9 512 59.4
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 8.7e-162 574.7 504 60.7
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 4.3e-161 572.4 500 60.4
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 2.0e-145 520.4 347 77.8
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.5e-134 483.0 363 72.5
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 2.3e-130 470.3 410 59.3
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 1.6e-110 404.4 567 42.9
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 6.1e-107 392.5 261 74.3
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 1.7e-104 384.4 263 71.5
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.2e-79 300.4 370 47.8
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 9.2e-79 298.9 286 56.3
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 4.4e-73 280.0 174 80.5
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.4e-72 275.8 460 40.7
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 7.3e-68 262.7 189 68.3
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 2.4e-58 231.1 153 74.5
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.1e-58 230.7 137 75.9
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 2.0e-57 228.0 160 70.0
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 2.5e-55 221.1 235 52.8
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 7.6e-49 199.5 142 78.2
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 2.2e-48 198.0 134 77.6
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 1.4e-42 178.7 125 70.4
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.4e-42 178.7 148 60.8
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.9e-39 168.3 156 59.0
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 1.3e-35 155.6 97 78.4
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 8.2e-35 152.9 297 37.7
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-34 152.5 99 80.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.1e-34 152.5 99 80.8
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 9.1e-34 149.4 212 42.0
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 9.1e-34 149.4 132 65.9
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 6.5e-32 143.3 174 49.4
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 1.3e-24 119.0 118 54.2
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.1e-18 97.8 80 67.5
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.0e-17 95.1 62 72.6
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 2.2e-16 91.7 189 35.4
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.1e-15 89.4 63 77.8
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 1.9e-15 88.6 206 31.6
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 5.7e-12 77.0 50 76.0
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 7.0e-10 70.1 57 63.2
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 6.1e-06 57.0 111 30.6


User provided reference genes

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