Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1355.1 652 100.0
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1225.7 650 90.8
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1218.8 650 89.5
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1207.2 646 88.4
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1206.8 645 89.1
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1206.8 645 89.1
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1206.4 645 89.1
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1201.4 646 88.1
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1199.9 646 87.8
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1196.8 646 87.5
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1196.8 648 88.1
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1196.4 647 87.6
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1196.0 645 87.8
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 652 87.9
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1194.9 646 87.8
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1194.5 644 88.8
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1193.7 645 87.1
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 643 88.8
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1192.6 645 88.7
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1191.8 646 87.3
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1191.4 645 87.0
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1189.9 645 87.9
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1189.1 648 87.7
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1187.6 646 87.2
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1187.2 649 87.7
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1187.2 649 87.8
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1186.0 645 87.6
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1186.0 646 86.7
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1184.9 647 87.8
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1184.1 648 87.7
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 645 87.4
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1183.3 649 87.7
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1182.9 649 87.4
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 646 86.2
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1181.4 649 87.2
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 646 86.7
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1177.5 645 86.8
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1176.0 645 86.2
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1175.6 645 87.8
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1173.3 648 88.0
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1172.9 645 86.5
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 647 86.4
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1172.1 646 87.0
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1171.4 646 86.5
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1169.8 646 86.4
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 651 84.6
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 645 86.7
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 645 86.5
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 646 85.8
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 645 86.4
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1166.8 647 87.3
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 645 87.0
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 643 86.9
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 645 85.7
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 652 85.7
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 645 85.9
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1161.7 645 85.3
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 645 85.6
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1161.0 645 85.9
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1160.2 648 85.5
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 645 87.1
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1158.3 645 85.6
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1157.9 645 85.0
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 645 85.6
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1156.7 646 85.6
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1156.7 645 85.9
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1156.0 645 85.0
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1155.2 645 85.1
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 645 86.0
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 646 84.7
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1151.3 646 84.7
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1150.2 652 84.5
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1149.8 645 85.3
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1148.7 646 85.4
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 645 85.0
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 644 84.9
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1140.2 646 85.0
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1139.4 647 84.9
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1139.0 646 84.2
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1138.3 649 84.6
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1138.3 646 84.1
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 648 84.6
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 648 84.6
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 648 84.7
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1137.9 649 84.1
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1136.3 645 83.9
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 648 84.7
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 646 83.7
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1134.4 648 84.6
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1131.3 649 85.2
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 649 82.9
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 648 84.0
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1130.2 649 84.9
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1129.8 647 83.6
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1129.4 711 77.4
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1128.6 593 89.5
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1126.7 648 84.1
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1118.6 598 89.0
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1116.7 596 89.6
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1114.8 628 83.9
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1102.4 644 83.4
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 0.0e+00 1086.2 646 81.3
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 0.0e+00 1080.5 648 80.6
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 0.0e+00 1077.0 646 80.5
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 1.1e-308 1062.8 673 76.2
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.2e-302 1042.7 542 90.0
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 1.0e-298 1029.6 587 83.1
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 3.9e-298 1027.7 587 82.8
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 2.5e-297 1025.0 615 80.5
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 4.7e-296 1020.8 627 78.1
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 3.5e-291 1004.6 615 80.3
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.2e-285 985.3 590 78.8
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 2.7e-283 978.4 556 82.2
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 1.3e-253 879.8 476 87.4
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 1.8e-226 789.6 532 71.2
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 6.2e-195 684.9 397 82.4
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 8.9e-194 681.0 426 79.6
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 3.7e-192 675.6 581 59.9
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 1.4e-146 524.2 267 92.5
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 1.0e-125 454.9 604 44.5
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 1.6e-73 281.6 217 64.1
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.1e-69 268.9 125 97.6
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 5.1e-48 196.8 153 66.7
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 1.9e-47 194.9 108 85.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 1.3e-40 172.2 91 90.1
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 5.3e-37 160.2 150 59.3
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 6.9e-21 106.7 53 94.3
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 7.6e-20 103.2 53 92.5
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 6.7e-08 63.5 32 87.5


User provided reference genes

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