Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.5e-173 612.1 319 100.0
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.6e-108 395.6 324 71.6
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.1e-67 261.2 344 51.7
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.3e-67 258.8 329 55.3
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.2e-66 257.7 320 52.8
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.6e-66 257.3 337 53.1
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 7.7e-66 255.0 346 50.6
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.2e-63 247.7 359 48.5
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 6.7e-62 241.9 313 50.2
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.3e-61 239.6 339 49.0
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.3e-61 239.6 339 49.0
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 5.7e-61 238.8 372 46.8
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.7e-60 237.3 324 51.2
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.7e-60 237.3 334 48.2
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.7e-60 237.3 362 46.4
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.2e-60 236.9 369 47.2
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 2.8e-60 236.5 368 45.7
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 4.8e-60 235.7 289 53.6
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.3e-60 235.3 350 46.9
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.1e-59 234.6 376 45.2
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.4e-59 233.4 335 47.8
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 4.1e-59 232.6 284 52.5
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 7.0e-59 231.9 363 44.4
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 7.0e-59 231.9 348 48.3
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.2e-58 231.1 370 45.4
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.6e-58 230.7 344 48.3
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.6e-58 230.7 324 49.7
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.0e-58 230.3 325 51.1
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 3.5e-58 229.6 335 47.2
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 4.5e-58 229.2 329 48.0
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 5.9e-58 228.8 323 48.3
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.0e-57 228.0 318 49.4
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.0e-57 228.0 380 44.2
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 2.2e-57 226.9 348 47.1
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 2.9e-57 226.5 371 45.0
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.9e-57 226.5 326 48.8
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 3.8e-57 226.1 330 49.1
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 5.0e-57 225.7 326 48.8
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 5.0e-57 225.7 366 45.4
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 3.2e-56 223.0 372 44.6
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 3.2e-56 223.0 353 45.3
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.2e-56 223.0 370 43.5
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 4.2e-56 222.6 363 44.9
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 9.4e-56 221.5 324 48.5
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.2e-55 221.1 324 48.5
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.1e-55 220.3 360 44.7
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 2.7e-55 219.9 369 43.9
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 8.0e-55 218.4 402 42.0
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 8.0e-55 218.4 407 41.0
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.3e-54 216.9 349 45.8
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.0e-54 216.5 336 46.1
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.0e-54 216.5 363 44.1
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 6.8e-54 215.3 435 40.0
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 8.8e-54 214.9 337 46.6
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 8.8e-54 214.9 352 44.0
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 8.8e-54 214.9 319 48.9
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.5e-53 214.2 316 49.4
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 4.4e-53 212.6 255 54.1
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 7.5e-53 211.8 351 44.2
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 9.8e-53 211.5 356 46.1
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 9.8e-53 211.5 366 44.5
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 1.3e-52 211.1 393 40.7
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.3e-52 211.1 339 46.3
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.3e-52 211.1 365 43.6
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.3e-52 211.1 337 44.5
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.7e-52 210.7 395 41.3
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 1.7e-52 210.7 395 41.3
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.2e-52 210.3 291 50.2
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.2e-52 210.3 365 43.3
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.7e-52 209.5 351 45.0
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 6.3e-52 208.8 337 46.0
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 8.3e-52 208.4 341 45.5
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.1e-51 208.0 410 39.8
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.4e-51 207.6 360 43.6
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.4e-51 206.8 350 43.7
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 2.4e-51 206.8 334 45.2
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.1e-51 206.5 369 42.3
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 9.1e-51 204.9 346 44.8
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 1.2e-50 204.5 379 40.1
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.2e-50 204.5 350 42.6
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 2.7e-50 203.4 361 42.7
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 4.5e-50 202.6 365 41.6
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 5.9e-50 202.2 345 42.6
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 2.9e-49 199.9 364 45.6
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 3.8e-49 199.5 339 42.5
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.8e-49 199.5 382 42.4
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.8e-49 199.5 376 40.4
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 6.5e-49 198.7 362 43.1
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.5e-48 197.6 354 43.2
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.9e-48 197.2 356 41.9
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.9e-48 197.2 344 42.7
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.9e-48 197.2 372 40.6
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 7.2e-48 195.3 390 39.5
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.2e-47 194.5 315 44.4
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 2.7e-47 193.4 350 43.7
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 2.7e-47 193.4 409 38.9
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 2.7e-47 193.4 344 43.0
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 4.7e-47 192.6 318 42.1
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 4.7e-47 192.6 351 41.9
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 6.1e-47 192.2 345 42.0
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 8.0e-47 191.8 319 42.0
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.4e-46 191.0 347 41.5
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.8e-46 190.7 368 41.3
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.8e-46 190.7 398 41.0
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 1.8e-46 190.7 377 41.1
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.8e-46 190.7 307 44.0
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 2.3e-46 190.3 340 42.6
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 2.3e-46 190.3 289 46.4
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 2.3e-46 190.3 345 42.0
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 3.0e-46 189.9 317 43.5
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 5.2e-46 189.1 346 41.3
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 5.2e-46 189.1 346 41.3
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 5.2e-46 189.1 346 41.3
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 5.2e-46 189.1 324 42.9
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 6.8e-46 188.7 333 42.9
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.5e-45 187.6 349 41.0
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-45 187.6 349 41.0
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.5e-45 187.6 371 40.2
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-45 187.2 324 42.6
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 2.0e-45 187.2 354 42.1
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 3.4e-45 186.4 349 40.7
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 3.4e-45 186.4 345 43.2
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 4.4e-45 186.0 343 42.9
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 4.4e-45 186.0 396 38.9
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.4e-45 186.0 370 39.7
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 4.4e-45 186.0 379 39.8
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.2e-44 183.7 377 39.0
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.8e-44 183.3 348 40.5
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 4.9e-44 182.6 369 41.2
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 6.3e-44 182.2 284 46.1
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.1e-43 181.4 351 40.2
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.4e-43 181.0 354 40.1
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.8e-43 180.6 384 39.3
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.1e-43 179.9 374 39.3
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 5.4e-43 179.1 402 37.3
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 7.0e-43 178.7 340 39.7
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 4.5e-42 176.0 362 40.1
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 4.5e-42 176.0 355 40.6
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.0e-41 174.9 380 39.7
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 6.6e-41 172.2 361 40.4
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 6.1e-39 165.6 383 36.8
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 8.0e-39 165.2 393 36.9
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 2.3e-38 163.7 368 35.3
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 5.2e-38 162.5 354 38.4
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 4.4e-37 159.5 293 42.7
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 8.3e-36 155.2 87 92.0
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 8.3e-36 155.2 322 38.2
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 7.8e-34 148.7 302 37.7
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.0e-33 148.3 307 41.4
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.5e-32 144.4 365 34.8
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 4.7e-31 139.4 290 37.9
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 4.7e-31 139.4 290 37.9
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.0e-30 138.3 106 67.9
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.4e-30 137.9 290 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 6.4e-28 129.0 355 37.2
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 3.1e-22 110.2 357 29.4
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 6.8e-22 109.0 305 33.4
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 2.1e-18 97.4 93 50.5
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.7e-17 94.4 108 61.1
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.6e-17 92.4 61 72.1
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-16 91.7 135 43.7
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 5.6e-16 89.4 125 44.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 5.6e-16 89.4 125 44.0
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.4e-14 84.7 163 37.4
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 6.0e-10 69.3 263 27.0
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 6.0e-10 69.3 78 43.6
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 5.6e-08 62.8 51 66.7
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 2.8e-07 60.5 117 35.9
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.6e-07 60.1 53 58.5
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 4.7e-07 59.7 74 41.9
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 8.1e-07 58.9 38 73.7
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 4.0e-06 56.6 108 32.4
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 5.2e-06 56.2 88 45.5
Nitab4.5_0008458g0030 Nicotiana tabacum HOM05D002258 ORTHO05D002539 6.8e-06 55.8 120 32.5


User provided reference genes

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