Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 4.8e-38 160.6 77 100.0
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 3.5e-33 144.4 77 94.8
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 5.3e-21 104.0 53 92.5
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.2e-20 102.8 51 96.1
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 3.2e-18 94.7 78 65.4
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 1.2e-17 92.8 81 58.0
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 2.7e-17 91.7 73 64.4
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 6.1e-17 90.5 58 67.2
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 6.1e-17 90.5 81 56.8
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 7.9e-17 90.1 77 61.0
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 7.9e-17 90.1 81 53.1
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 7.9e-17 90.1 54 75.9
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 7.9e-17 90.1 54 75.9
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 1.8e-16 89.0 58 69.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.8e-16 89.0 81 56.8
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.0e-16 88.2 78 60.3
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 3.9e-16 87.8 81 58.0
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 8.7e-16 86.7 56 69.6
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 8.7e-16 86.7 59 67.8
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 1.5e-15 85.9 74 59.5
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 1.5e-15 85.9 76 57.9
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 1.9e-15 85.5 59 66.1
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.5e-15 85.1 72 62.5
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.5e-15 85.1 77 62.3
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 3.3e-15 84.7 81 56.8
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 4.3e-15 84.3 54 72.2
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 4.3e-15 84.3 76 59.2
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 4.3e-15 84.3 54 72.2
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 5.7e-15 84.0 74 56.8
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 5.7e-15 84.0 81 54.3
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 5.7e-15 84.0 79 54.4
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 7.4e-15 83.6 81 54.3
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 7.4e-15 83.6 64 67.2
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 7.4e-15 83.6 59 64.4
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 7.4e-15 83.6 56 69.6
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 9.7e-15 83.2 81 54.3
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 9.7e-15 83.2 54 68.5
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 9.7e-15 83.2 85 54.1
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 9.7e-15 83.2 73 57.5
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 1.3e-14 82.8 54 68.5
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 1.6e-14 82.4 81 54.3
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 1.6e-14 82.4 81 55.6
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 2.2e-14 82.0 53 67.9
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 2.2e-14 82.0 81 54.3
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 3.7e-14 81.3 54 66.7
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.8e-14 80.9 77 54.5
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 6.3e-14 80.5 54 66.7
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 8.2e-14 80.1 54 66.7
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 8.2e-14 80.1 54 66.7
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 8.2e-14 80.1 54 66.7
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 8.2e-14 80.1 54 66.7
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 8.2e-14 80.1 54 66.7
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 8.2e-14 80.1 77 54.5
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 8.2e-14 80.1 77 54.5
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 8.2e-14 80.1 77 54.5
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 8.2e-14 80.1 77 54.5
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 8.2e-14 80.1 77 54.5
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 8.2e-14 80.1 81 53.1
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 1.1e-13 79.7 54 66.7
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 1.4e-13 79.3 54 64.8
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 1.4e-13 79.3 54 64.8
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 1.4e-13 79.3 54 64.8
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 1.8e-13 79.0 54 64.8
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 2.4e-13 78.6 54 66.7
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 3.1e-13 78.2 54 64.8
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 6.9e-13 77.0 54 63.0
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 6.9e-13 77.0 80 53.8
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 9.1e-13 76.6 48 72.9
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 9.1e-13 76.6 77 54.5
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 9.1e-13 76.6 87 48.3
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 9.1e-13 76.6 76 52.6
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 1.2e-12 76.3 73 56.2
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 1.5e-12 75.9 54 63.0
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 2.0e-12 75.5 54 64.8
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 2.6e-12 75.1 77 53.2
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 5.9e-12 73.9 77 51.9
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 7.7e-12 73.6 68 55.9
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 1.0e-11 73.2 71 56.3
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 1.3e-11 72.8 42 78.6
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 1.3e-11 72.8 85 49.4
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 2.2e-11 72.0 61 60.7
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-11 71.6 66 59.1
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.9e-11 71.6 66 59.1
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 3.8e-11 71.2 77 50.6
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 5.0e-11 70.9 91 46.2
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 6.5e-11 70.5 71 53.5
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 6.5e-11 70.5 38 84.2
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 6.5e-11 70.5 54 63.0
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.1e-10 69.7 62 58.1
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 1.4e-10 69.3 38 81.6
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 1.4e-10 69.3 71 52.1
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 1.9e-10 68.9 38 81.6
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 1.9e-10 68.9 38 81.6
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.9e-10 68.9 40 80.0
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 1.9e-10 68.9 40 80.0
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 2.5e-10 68.6 65 55.4
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.2e-09 66.2 48 64.6
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 1.2e-09 66.2 59 59.3
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 2.1e-09 65.5 59 59.3
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 2.1e-09 65.5 59 59.3
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 2.1e-09 65.5 71 52.1
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 3.0e-08 61.6 59 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 1.7e-06 55.8 54 51.9
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 6.3e-06 53.9 44 54.5
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 6.3e-06 53.9 54 50.0


User provided reference genes

Program Settings