Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1461.4 742 100.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1318.1 743 90.6
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1259.2 743 87.1
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1144.8 672 82.4
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1123.6 626 85.0
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1119.0 625 85.0
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1118.2 686 79.6
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1114.4 700 78.0
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1106.7 650 81.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1091.6 655 79.5
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 0.0e+00 1085.5 679 77.3
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1079.3 680 77.4
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1078.9 680 76.9
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1076.2 654 78.0
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 4.6e-311 1070.8 652 77.3
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 7.6e-311 1070.1 652 77.1
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.7e-310 1068.9 679 76.1
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 2.2e-310 1068.5 678 76.7
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 2.9e-310 1068.1 653 77.3
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 2.5e-309 1065.1 680 74.9
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.5e-309 1065.1 652 76.8
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 3.0e-307 1058.1 685 74.2
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 8.9e-307 1056.6 631 79.7
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 4.4e-306 1054.3 703 72.8
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 9.8e-306 1053.1 627 79.9
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 5.4e-304 1047.3 699 73.7
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.6e-303 1045.8 675 75.3
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 4.5e-303 1044.3 621 79.9
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 5.9e-303 1043.9 677 74.2
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 2.9e-302 1041.6 665 75.3
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 8.6e-302 1040.0 653 77.6
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 3.3e-301 1038.1 650 76.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 4.7e-300 1034.2 619 79.0
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.1e-300 1033.9 707 72.6
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 4.0e-299 1031.2 686 73.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 8.9e-299 1030.0 681 73.3
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 8.9e-299 1030.0 651 75.0
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.5e-298 1029.2 676 72.6
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.5e-298 1029.2 628 76.6
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.7e-297 1025.8 646 74.9
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 2.0e-295 1018.8 698 70.8
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 5.0e-294 1014.2 675 72.0
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 2.5e-293 1011.9 670 71.8
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 7.3e-293 1010.4 622 75.9
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 5.2e-291 1004.2 710 68.6
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.2e-290 1003.0 663 71.8
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.5e-290 1002.7 690 71.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 6.4e-289 997.3 691 72.1
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 8.3e-289 996.9 681 69.9
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 5.4e-288 994.2 717 69.0
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 5.0e-286 987.6 673 70.6
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 3.3e-285 984.9 697 68.6
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.6e-284 982.6 623 73.2
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.1e-284 982.2 687 69.7
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.8e-284 981.9 687 69.6
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 6.2e-284 980.7 645 71.8
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 1.4e-283 979.5 625 75.7
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 5.2e-283 977.6 682 71.1
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.3e-281 973.0 663 68.6
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 2.7e-279 965.3 568 80.8
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 3.0e-278 961.8 629 71.7
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-275 953.0 622 72.3
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.1e-275 951.8 621 72.5
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 4.0e-275 951.4 601 74.9
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 8.9e-275 950.3 676 67.2
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 5.8e-274 947.6 690 67.8
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 5.8e-274 947.6 690 67.8
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 5.8e-274 947.6 690 67.8
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 4.9e-273 944.5 629 70.9
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 8.4e-273 943.7 629 70.9
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 8.4e-273 943.7 697 67.3
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 1.4e-272 943.0 764 62.7
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.9e-272 942.6 629 70.9
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 2.4e-272 942.2 685 67.7
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.1e-272 941.4 685 67.7
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 7.1e-272 940.6 629 70.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 1.6e-271 939.5 680 67.4
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.7e-271 938.7 681 67.3
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 3.5e-271 938.3 695 68.1
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 6.0e-271 937.6 688 67.3
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 2.3e-270 935.6 629 70.6
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 8.7e-270 933.7 608 77.1
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.9e-269 932.6 543 81.0
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.2e-268 929.9 629 72.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.8e-268 928.7 635 72.8
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.1e-267 926.8 691 68.2
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.2e-266 923.3 630 70.6
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 5.8e-266 921.0 688 66.1
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 7.6e-266 920.6 696 65.2
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 9.9e-266 920.2 711 65.4
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 2.2e-265 919.1 646 67.2
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 6.4e-265 917.5 623 70.8
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.9e-264 916.0 623 70.6
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 7.3e-261 904.0 686 63.4
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.6e-260 902.9 675 69.2
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.8e-260 902.1 654 68.3
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 2.3e-254 882.5 710 63.2
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.7e-254 880.9 686 64.7
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 8.7e-254 880.6 734 61.6
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 5.6e-253 877.9 648 66.8
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.8e-249 865.1 666 64.7
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.4e-243 846.7 690 63.3
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.6e-239 833.2 681 62.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.8e-235 819.7 648 63.3
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 3.1e-235 818.9 631 61.2
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.0e-234 816.2 697 57.8
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 6.1e-231 804.7 740 57.6
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.3e-228 797.0 666 61.0
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.0e-225 787.3 681 60.6
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 3.9e-222 775.4 597 66.5
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 5.1e-222 775.0 689 55.9
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.4e-221 771.9 624 59.5
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.7e-220 768.8 718 54.7
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.5e-213 746.9 556 64.7
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.2e-210 737.3 497 73.4
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 6.1e-207 724.9 679 56.6
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.0e-202 709.9 474 72.2
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.2e-201 706.4 647 57.5
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.2e-200 701.4 570 62.5
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.0e-197 693.3 669 54.9
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 5.7e-197 691.8 433 75.8
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 3.7e-196 689.1 585 57.9
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 4.2e-192 675.6 491 68.8
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 4.9e-188 662.1 441 74.8
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.9e-184 650.2 439 70.6
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.6e-181 639.8 481 63.8
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 8.3e-180 634.8 499 62.7
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.9e-176 623.6 436 66.7
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.6e-175 620.5 429 67.6
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.1e-168 597.8 707 46.5
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 7.6e-157 558.5 718 42.9
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.6e-146 522.7 652 41.7
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.5e-141 507.7 483 56.1
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 6.4e-140 502.3 508 53.3
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.4e-134 484.6 690 39.9
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.6e-130 471.1 630 40.5
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.4e-115 421.4 322 62.7
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.6e-109 400.6 438 48.6
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 8.5e-100 369.0 224 75.9
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 9.7e-96 355.5 189 84.7
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 3.8e-92 343.6 183 85.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.9e-91 341.3 191 78.5
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.1e-86 323.9 169 87.0
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.4e-78 297.7 187 70.6
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.1e-78 297.0 187 70.6
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.2e-77 295.4 192 69.3
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 3.0e-73 280.8 187 69.5
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 9.2e-70 269.2 156 75.6
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.0e-65 253.8 168 71.4
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.5e-64 251.9 136 81.6
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 3.9e-60 237.3 174 66.7
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.6e-53 215.3 151 64.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.1e-50 204.9 103 84.5
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.8e-42 177.9 84 91.7
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 2.0e-40 171.8 113 70.8
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 2.2e-39 168.3 110 70.9
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 7.1e-38 163.3 106 73.6
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 2.7e-29 134.8 79 73.4
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 9.6e-27 126.3 75 74.7
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 4.8e-26 124.0 72 76.4
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 8.1e-26 123.2 72 73.6
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.8e-25 122.1 147 47.6
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 3.1e-25 121.3 114 50.9
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 2.9e-23 114.8 85 62.4
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.9e-14 85.5 50 72.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 2.1e-13 82.0 51 74.5
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 7.4e-11 73.6 44 77.3
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 1.3e-10 72.8 44 72.7
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.1e-06 59.7 432 22.9
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 3.2e-06 58.2 62 50.0
Gohir.D08G151150 Gossypium hirsutum HOM05D001715 ORTHO05D003849 4.2e-06 57.8 156 28.2


User provided reference genes

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