Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00408g0006064 Lotus japonicus HOM05D001670 ORTHO05D010670 5.8e-65 250.8 128 100.0
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 7.4e-52 207.2 111 96.4
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 1.8e-42 176.0 111 81.1
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 2.0e-41 172.6 111 80.2
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 1.7e-40 169.5 111 78.4
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 8.5e-40 167.2 121 75.2
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 1.9e-39 166.0 111 78.4
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 9.4e-39 163.7 111 73.9
Haze_02723 Corylus avellana HOM05D001670 ORTHO05D002980 2.1e-38 162.5 111 73.9
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.0e-37 160.2 121 71.9
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.5e-36 156.4 121 70.2
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 4.3e-36 154.8 111 70.3
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 9.7e-36 153.7 111 73.0
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 1.3e-35 153.3 111 68.5
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 3.1e-34 148.7 109 69.7
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 6.9e-34 147.5 111 68.5
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.2e-33 146.7 111 66.7
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 1.2e-33 146.7 105 69.5
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.5e-33 146.4 109 66.1
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 2.0e-33 146.0 109 68.8
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 2.0e-33 146.0 111 69.4
Gohir.D11G082400 Gossypium hirsutum HOM05D001670 ORTHO05D002980 4.5e-33 144.8 109 66.1
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 4.5e-33 144.8 109 66.1
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 7.7e-33 144.1 111 66.7
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 7.7e-33 144.1 111 65.8
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 1.3e-32 143.3 109 67.0
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.3e-32 143.3 111 66.7
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 2.2e-32 142.5 105 65.7
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 2.9e-32 142.1 111 67.6
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 2.9e-32 142.1 112 66.1
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 6.5e-32 141.0 111 62.2
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 1.1e-31 140.2 111 64.9
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.1e-31 140.2 109 65.1
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 2.5e-31 139.0 111 60.4
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 7.2e-31 137.5 111 60.4
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 1.6e-30 136.3 111 64.9
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.1e-30 136.0 109 65.1
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 3.6e-30 135.2 109 63.3
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 3.6e-30 135.2 105 68.6
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 3.6e-30 135.2 110 60.0
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 4.7e-30 134.8 111 65.8
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 6.1e-30 134.4 110 60.0
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 6.1e-30 134.4 111 63.1
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 7.9e-30 134.0 111 64.9
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 7.9e-30 134.0 111 64.9
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 7.9e-30 134.0 111 64.9
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 1.0e-29 133.7 111 63.1
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-29 133.3 111 64.0
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.4e-29 133.3 111 64.0
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.3e-29 132.5 111 60.4
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.3e-29 132.5 111 60.4
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.9e-29 131.7 111 64.0
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.9e-29 131.7 111 64.0
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 6.7e-29 131.0 110 60.0
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.1e-28 130.2 111 56.8
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 1.5e-28 129.8 111 62.2
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 2.0e-28 129.4 116 61.2
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.3e-28 128.6 111 63.1
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 7.4e-28 127.5 112 62.5
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 7.4e-28 127.5 110 57.3
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 2.2e-27 125.9 126 54.8
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 4.8e-27 124.8 110 55.5
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 8.2e-27 124.0 110 61.8
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.8e-26 122.9 111 57.7
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 2.4e-26 122.5 111 56.8
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 3.1e-26 122.1 111 55.9
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 3.1e-26 122.1 111 56.8
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 3.1e-26 122.1 111 55.0
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 5.3e-26 121.3 111 55.9
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 7.0e-26 120.9 111 55.9
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 7.0e-26 120.9 111 58.6
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 1.2e-25 120.2 109 56.0
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.2e-25 120.2 111 59.5
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.5e-25 119.8 110 53.6
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 2.6e-25 119.0 111 57.7
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 3.5e-25 118.6 111 52.3
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.0e-24 117.1 109 52.3
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 2.9e-24 115.5 111 49.5
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 2.9e-24 115.5 111 55.0
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 3.8e-24 115.2 109 52.3
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 6.5e-24 114.4 112 54.5
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 3.2e-23 112.1 109 53.2
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 5.5e-23 111.3 105 51.4
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 7.2e-23 110.9 105 56.2
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 7.2e-23 110.9 105 51.4
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 7.2e-23 110.9 121 47.1
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 7.2e-23 110.9 109 53.2
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 9.4e-23 110.5 111 49.5
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 9.4e-23 110.5 111 47.7
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 1.6e-22 109.8 101 60.4
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.6e-22 109.8 109 55.0
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.6e-22 109.8 119 50.4
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 2.1e-22 109.4 109 53.2
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 2.7e-22 109.0 111 48.6
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 2.7e-22 109.0 111 51.4
BcaNung05012 Brassica carinata HOM05D001670 ORTHO05D002980 4.7e-22 108.2 111 47.7
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 4.7e-22 108.2 111 47.7
C08p54060 Brassica napus HOM05D001670 ORTHO05D002980 4.7e-22 108.2 111 47.7
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 4.7e-22 108.2 111 47.7
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 4.7e-22 108.2 112 51.8
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 6.1e-22 107.8 121 46.3
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 6.1e-22 107.8 121 46.3
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 6.1e-22 107.8 121 46.3
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 6.1e-22 107.8 121 46.3
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 6.1e-22 107.8 121 46.3
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 6.1e-22 107.8 121 46.3
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 6.1e-22 107.8 121 47.1
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 8.0e-22 107.5 114 53.5
PGSC0003DMG401000201 Solanum tuberosum HOM05D001670 ORTHO05D002980 1.0e-21 107.1 110 48.2
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 1.4e-21 106.7 111 51.4
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 1.8e-21 106.3 111 47.7
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 1.8e-21 106.3 111 47.7
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 1.8e-21 106.3 111 47.7
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 4.0e-21 105.1 111 45.9
Thecc.03G154200 Theobroma cacao HOM05D001670 ORTHO05D002980 4.0e-21 105.1 111 50.5
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 5.2e-21 104.8 109 51.4
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 2.0e-20 102.8 111 45.9
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 2.0e-20 102.8 111 45.9
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 2.0e-20 102.8 103 57.3
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 3.3e-20 102.1 111 47.7
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 3.3e-20 102.1 109 48.6
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 5.7e-20 101.3 110 48.2
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 5.7e-20 101.3 111 47.7
CDE09G0971 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 9.7e-20 100.5 103 50.5
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 1.3e-19 100.1 111 48.6
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 2.2e-19 99.4 86 64.0
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 2.8e-19 99.0 113 52.2
PGSC0003DMG400000049 Solanum tuberosum HOM05D001670 ORTHO05D002980 2.8e-19 99.0 110 46.4
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 3.7e-19 98.6 115 52.2
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 3.7e-19 98.6 105 51.4
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 6.3e-19 97.8 113 50.4
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 4.1e-18 95.1 109 50.5
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 7.0e-18 94.4 103 54.4
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 1.2e-17 93.6 110 51.8
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 1.2e-17 93.6 110 51.8
SHI13579 Sapria himalayana HOM05D001670 ORTHO05D002980 2.6e-17 92.4 104 52.9
Actinidia24999 Actinidia chinensis HOM05D001670 ORTHO05D002980 1.9e-15 86.3 111 44.1
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 3.2e-15 85.5 107 45.8
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 8.0e-14 80.9 104 41.3
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.0e-13 80.5 104 48.1
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.0e-13 80.5 126 40.5
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 6.8e-13 77.8 101 45.5
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 4.4e-12 75.1 64 57.8
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 5.7e-12 74.7 104 40.4
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 7.5e-12 74.3 111 37.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 3.7e-11 72.0 108 45.4
Lsat_1_v5_gn_4_44300 Lactuca sativa HOM05D001670 ORTHO05D017370 8.3e-11 70.9 110 45.5
CDE11G0646 Ceratophyllum demersum HOM05D001670 ORTHO05D017370 1.4e-10 70.1 57 59.6
Lsat_1_v5_gn_5_55541 Lactuca sativa HOM05D000041 ORTHO05D000452 5.4e-10 68.2 54 64.8
MBI05_g24158_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D010670 5.9e-09 64.7 60 55.0
CSS0045688 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 1.3e-08 63.5 107 38.3
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.1e-07 60.5 101 34.7
MBI08_g05536_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D010670 1.9e-07 59.7 60 51.7
MBI12_g15742_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D010670 4.2e-07 58.5 60 50.0
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 9.4e-07 57.4 110 30.9
CAN.G78.28 Capsicum annuum HOM05D001670 ORTHO05D017370 2.7e-06 55.8 55 54.5


User provided reference genes

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