Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 0.0e+00 1799.6 917 100.0
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 0.0e+00 1367.1 936 76.5
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 0.0e+00 1354.3 924 76.7
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 0.0e+00 1338.6 920 76.2
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 0.0e+00 1325.1 923 75.0
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 0.0e+00 1303.5 930 75.2
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 0.0e+00 1258.0 931 72.7
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 0.0e+00 1253.8 934 71.7
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 0.0e+00 1250.0 894 73.3
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 0.0e+00 1178.7 813 75.6
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 3.8e-291 1005.0 992 57.5
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 4.2e-290 1001.5 984 57.8
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 6.0e-289 997.7 984 57.6
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 2.2e-283 979.2 1047 54.1
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.5e-282 974.5 693 74.3
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 2.5e-274 949.1 974 56.4
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 2.0e-268 929.5 929 58.9
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 7.7e-268 927.5 990 54.1
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.2e-267 926.0 914 57.2
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 6.5e-267 924.5 952 56.6
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 5.5e-266 921.4 977 54.8
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 7.9e-265 917.5 947 56.4
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 2.0e-263 912.9 918 57.2
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 1.7e-262 909.8 958 54.9
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.3e-262 907.9 873 58.2
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 5.3e-261 904.8 957 55.0
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 5.3e-261 904.8 922 56.2
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.2e-260 903.7 851 58.3
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 2.6e-260 902.5 932 55.4
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 3.4e-260 902.1 990 53.1
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 4.5e-260 901.7 963 54.1
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.7e-259 899.8 990 52.8
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 4.7e-257 891.7 996 53.1
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 8.8e-256 887.5 949 55.1
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 4.8e-254 881.7 938 55.3
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 2.4e-253 879.4 924 55.4
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 2.0e-252 876.3 922 55.3
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 7.7e-252 874.4 954 54.2
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 5.5e-250 868.2 993 51.9
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 1.2e-249 867.1 930 55.8
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 2.3e-248 862.8 977 52.2
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.0e-248 862.1 965 53.4
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.1e-245 854.0 900 54.7
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 3.1e-245 852.4 951 52.5
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 9.1e-245 850.9 955 51.8
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.7e-243 846.7 945 52.2
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.2e-243 846.3 990 52.0
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 3.8e-243 845.5 877 54.0
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 5.0e-243 845.1 939 52.3
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 5.0e-243 845.1 935 52.7
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 1.9e-242 843.2 984 50.4
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 5.5e-242 841.6 957 51.9
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 2.3e-240 836.3 939 52.4
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 7.5e-239 831.2 905 53.3
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 9.8e-239 830.9 919 52.0
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 1.4e-237 827.0 971 50.8
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 2.4e-237 826.2 871 53.5
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 7.0e-237 824.7 941 50.7
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 7.0e-237 824.7 938 52.2
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 1.7e-235 820.1 907 52.1
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 3.8e-235 818.9 958 51.4
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.8e-232 810.1 932 50.9
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 2.0e-231 806.6 985 51.0
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 6.3e-230 801.6 936 48.8
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 5.4e-229 798.5 912 51.8
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 9.2e-229 797.7 978 50.3
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 1.3e-227 793.9 930 51.2
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.7e-227 793.5 848 52.8
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.1e-226 790.8 942 50.5
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 2.2e-222 776.5 805 54.2
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 1.4e-221 773.9 906 50.0
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 2.4e-221 773.1 918 50.3
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 2.7e-220 769.6 819 53.0
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 5.2e-216 755.4 910 49.7
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 6.8e-216 755.0 912 50.0
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 7.5e-215 751.5 739 57.2
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 1.9e-213 746.9 967 47.5
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.9e-213 746.9 933 48.6
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 4.1e-213 745.7 908 48.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 2.0e-212 743.4 915 48.2
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 3.0e-211 739.6 720 57.8
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 8.6e-211 738.0 842 51.8
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 4.7e-209 732.3 864 50.3
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 3.1e-208 729.6 938 46.9
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 4.0e-208 729.2 919 48.9
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 1.2e-207 727.6 929 48.2
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 4.9e-206 722.2 859 48.9
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.4e-205 720.7 907 46.6
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 2.4e-205 719.9 905 46.4
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 3.1e-200 703.0 912 46.4
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 4.0e-200 702.6 931 47.5
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 2.4e-197 693.3 830 48.7
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 7.1e-197 691.8 894 46.8
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 3.0e-195 686.4 974 44.1
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 4.9e-190 669.1 689 55.3
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 1.4e-181 641.0 583 58.8
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 6.0e-180 635.6 861 46.3
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 8.4e-174 615.1 620 54.5
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 9.3e-173 611.7 710 51.1
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 1.5e-170 604.4 649 53.3
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 8.2e-169 598.6 946 40.2
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.9e-150 537.0 416 69.2
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 6.5e-150 535.8 902 39.8
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 2.1e-148 530.8 1019 37.0
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 6.1e-148 529.3 923 38.5
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 5.5e-141 506.1 884 39.9
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 1.3e-134 485.0 977 36.2
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 2.7e-132 477.2 800 39.8
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.1e-128 463.8 487 52.8
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 3.3e-101 374.0 1047 29.4
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 3.5e-47 194.5 265 45.7
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 3.9e-46 191.0 414 31.4
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 5.7e-45 187.2 857 23.3
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.1e-43 183.0 375 32.0
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 6.3e-28 130.6 379 26.1
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.1e-27 129.8 150 50.0
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 1.8e-27 129.0 315 30.8
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 5.5e-24 117.5 161 47.8
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 2.0e-21 109.0 195 40.5
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.5e-16 92.8 463 22.0
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 5.2e-14 84.3 85 55.3
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 1.3e-12 79.7 108 45.4
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 8.0e-07 60.5 162 31.5


User provided reference genes

Program Settings