Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.3e-310 1068.9 555 100.0
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 1.5e-229 799.7 565 74.2
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 4.7e-228 794.7 553 76.5
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 1.8e-227 792.7 565 73.5
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 7.5e-226 787.3 561 73.8
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 1.3e-225 786.6 565 72.7
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 2.2e-225 785.8 579 73.7
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 2.8e-225 785.4 566 72.8
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 8.3e-225 783.9 564 73.0
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 1.3e-222 776.5 564 71.8
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 4.0e-219 765.0 582 72.2
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 3.5e-183 645.6 458 75.8
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 7.1e-160 568.2 553 54.1
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.2e-154 550.8 552 56.0
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 2.6e-154 549.7 533 58.0
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 5.0e-153 545.4 594 53.7
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 9.4e-152 541.2 551 53.4
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 7.9e-151 538.1 562 52.1
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 6.7e-150 535.0 561 52.0
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 3.7e-148 529.3 571 51.8
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 5.3e-147 525.4 709 46.7
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 2.0e-146 523.5 561 52.2
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 3.8e-145 519.2 575 52.9
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 5.5e-144 515.4 606 50.7
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 3.0e-142 509.6 564 51.6
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 2.2e-140 503.4 566 49.5
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 1.4e-139 500.7 561 50.8
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 3.4e-138 496.1 562 50.2
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 7.7e-138 495.0 562 49.3
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 1.2e-135 487.6 555 49.0
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 2.1e-135 486.9 549 49.2
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.0e-134 484.6 589 49.4
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 1.8e-134 483.8 558 48.9
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 9.7e-133 478.0 562 47.9
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 3.7e-132 476.1 558 48.7
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 4.8e-132 475.7 566 49.1
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 6.3e-132 475.3 569 46.7
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.1e-131 474.6 544 49.8
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 5.3e-131 472.2 559 47.0
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 9.1e-131 471.5 591 47.5
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 1.2e-130 471.1 552 48.6
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 3.8e-129 466.1 584 47.9
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.5e-128 464.2 578 46.9
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.9e-128 463.8 573 47.3
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 5.5e-128 462.2 570 45.8
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 9.4e-128 461.5 559 46.2
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 1.0e-126 458.0 560 47.1
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 1.0e-126 458.0 553 46.7
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 4.0e-126 456.1 581 47.0
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 2.0e-125 453.8 560 47.1
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 3.3e-125 453.0 561 45.5
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 3.3e-125 453.0 576 46.9
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.7e-124 450.7 568 47.4
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 4.8e-124 449.1 560 44.5
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 3.5e-122 443.0 547 47.9
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 1.0e-121 441.4 562 46.8
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 2.2e-121 440.3 594 43.4
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.2e-121 440.3 582 45.9
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 3.0e-118 429.9 565 43.7
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 4.0e-118 429.5 528 48.9
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.6e-117 426.8 574 44.9
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.8e-116 423.3 682 40.9
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 6.3e-116 422.2 560 42.1
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 8.3e-116 421.8 605 42.8
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 5.4e-115 419.1 533 45.0
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 5.9e-114 415.6 565 45.5
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 7.7e-114 415.2 569 42.5
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 1.7e-113 414.1 542 45.6
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 5.0e-113 412.5 575 41.7
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 4.2e-112 409.5 568 41.0
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 1.6e-111 407.5 567 41.4
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 4.7e-111 406.0 543 46.6
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 6.1e-111 405.6 558 44.8
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.0e-110 404.8 534 46.3
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 5.2e-110 402.5 576 40.8
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 1.7e-108 397.5 497 46.9
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 3.1e-107 393.3 577 40.6
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 4.1e-107 392.9 485 48.0
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 4.5e-106 389.4 512 45.9
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 2.9e-105 386.7 557 40.2
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 3.3e-104 383.3 541 43.3
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 3.0e-102 376.7 566 41.5
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 7.0e-99 365.5 491 44.0
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.6e-98 364.4 500 46.2
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 1.1e-96 358.2 583 41.0
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 1.6e-90 337.8 567 36.5
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 3.9e-89 333.2 566 37.6
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 5.2e-86 322.8 330 48.2
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 5.4e-83 312.8 572 36.4
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 3.9e-81 306.6 424 45.5
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 1.5e-80 304.7 504 37.5
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.4e-78 297.4 422 43.4
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.7e-74 283.9 445 41.8
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 4.6e-74 283.1 351 44.7
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 6.6e-73 279.3 494 40.7
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 5.6e-72 276.2 600 34.8
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 8.7e-65 252.3 423 40.9
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 2.8e-63 247.3 413 40.2
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 8.1e-63 245.7 207 59.4
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 4.5e-61 240.0 544 34.6
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 4.9e-60 236.5 480 37.3
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 7.6e-53 212.6 191 55.5
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 2.7e-50 204.1 211 54.0
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 3.5e-50 203.8 367 40.1
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.1e-46 192.2 148 64.2
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.4e-46 191.0 148 64.2
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 1.4e-43 181.8 114 79.8
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 5.7e-40 169.9 606 28.7
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 6.3e-39 166.4 138 61.6
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.0e-36 159.1 328 37.2
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 3.8e-36 157.1 119 63.9
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 2.3e-33 147.9 231 48.1
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 7.2e-27 126.3 642 24.9
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.5e-24 118.6 169 42.6
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 6.7e-17 93.2 72 65.3
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 1.3e-12 79.0 71 56.3
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 1.1e-11 75.9 194 30.9
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.2e-11 73.9 51 68.6
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 2.1e-10 71.6 62 48.4


User provided reference genes

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