Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 0.0e+00 1808.1 983 100.0
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 0.0e+00 1223.8 865 74.7
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 0.0e+00 1168.3 1004 66.7
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 0.0e+00 1132.9 887 68.1
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 0.0e+00 1128.6 988 64.1
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 0.0e+00 1122.5 894 67.4
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 0.0e+00 1118.2 877 67.7
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 0.0e+00 1106.7 998 65.1
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 0.0e+00 1104.4 851 68.4
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 0.0e+00 1102.0 905 66.1
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 0.0e+00 1098.6 969 62.7
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 0.0e+00 1079.7 816 68.1
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.3e-311 1073.2 885 64.4
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.7e-310 1069.3 984 63.2
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 3.9e-310 1068.1 823 67.4
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 8.7e-310 1067.0 879 65.4
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.1e-309 1066.6 881 64.9
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 1.9e-309 1065.8 879 66.1
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 3.6e-308 1061.6 865 66.2
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.4e-307 1058.9 843 65.8
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 5.3e-307 1057.7 871 65.8
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 9.0e-307 1057.0 859 64.7
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 1.7e-305 1052.7 841 66.6
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 1.7e-305 1052.7 1005 63.3
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 1.4e-304 1049.7 896 63.4
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 7.1e-304 1047.3 829 66.1
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 9.3e-304 1047.0 843 65.2
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 3.5e-303 1045.0 1006 62.3
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 4.6e-303 1044.6 870 64.5
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 6.0e-303 1044.3 830 67.0
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 1.3e-302 1043.1 819 68.0
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 1.8e-302 1042.7 803 69.2
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 4.3e-301 1038.1 890 63.0
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 2.8e-300 1035.4 992 62.9
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 1.8e-299 1032.7 870 62.8
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 3.1e-299 1031.9 846 64.7
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 4.0e-299 1031.6 832 66.5
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 6.9e-299 1030.8 870 62.9
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 9.0e-299 1030.4 1008 62.2
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 2.9e-297 1025.4 830 66.1
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 3.2e-296 1021.9 1004 60.8
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.0e-294 1016.9 882 63.6
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 3.9e-294 1015.0 885 61.0
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.1e-293 1013.4 886 62.9
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 1.1e-293 1013.4 1007 60.6
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 1.9e-293 1012.7 834 65.2
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 9.6e-293 1010.4 887 61.6
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.6e-292 1009.6 909 61.4
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.8e-292 1008.8 912 60.2
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.7e-292 1008.4 927 59.4
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 3.1e-291 1005.4 1007 59.8
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 1.5e-290 1003.0 898 60.6
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 2.6e-290 1002.3 884 60.9
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 3.4e-290 1001.9 962 58.3
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 1.4e-288 996.5 885 61.9
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 3.9e-286 988.4 892 61.3
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 1.9e-285 986.1 1034 59.6
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 4.3e-285 984.9 840 63.8
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 3.7e-284 981.9 810 64.3
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 9.0e-283 977.2 840 63.2
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 1.4e-278 963.4 853 61.2
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 6.7e-278 961.1 745 68.5
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 3.3e-277 958.7 884 59.3
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 5.7e-277 958.0 895 60.3
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 5.3e-275 951.4 842 60.2
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 1.9e-272 943.0 803 62.9
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 2.7e-271 939.1 696 69.7
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 1.4e-270 936.8 833 61.3
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 3.0e-270 935.6 798 63.3
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 8.2e-268 927.5 819 61.9
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.1e-267 927.2 824 61.3
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.4e-267 926.0 814 61.2
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 1.5e-266 923.3 914 58.8
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 1.3e-265 920.2 820 61.3
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 8.5e-265 917.5 838 59.7
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 8.0e-263 911.0 804 61.6
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 2.3e-262 909.4 890 57.6
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 8.8e-262 907.5 808 61.3
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 2.6e-261 906.0 808 61.3
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 2.6e-261 906.0 989 56.6
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 2.2e-260 902.9 921 57.1
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 9.1e-259 897.5 743 64.1
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 1.5e-256 890.2 805 60.6
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 1.5e-256 890.2 804 60.2
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 2.5e-256 889.4 888 56.3
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 4.0e-254 882.1 743 63.1
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 8.8e-254 880.9 856 57.2
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 8.8e-254 880.9 856 57.2
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 2.2e-252 876.3 887 56.0
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 4.8e-252 875.2 856 57.1
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.6e-250 870.2 813 58.3
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 3.6e-247 859.0 786 59.7
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 4.4e-245 852.0 799 56.1
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 5.9e-242 841.6 887 55.1
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 6.1e-239 831.6 807 57.4
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 3.4e-237 825.9 802 56.4
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 6.4e-220 768.5 895 50.6
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 1.1e-216 757.7 751 55.3
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.7e-172 610.9 507 62.3
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 2.6e-165 587.0 909 43.0
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 7.7e-157 558.9 935 41.3
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 1.4e-150 538.1 836 42.0
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 4.4e-144 516.5 672 47.6
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 2.9e-140 503.8 846 40.7
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.6e-136 490.7 350 70.0
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 4.4e-136 490.0 513 54.6
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 1.1e-123 448.7 439 52.8
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 7.8e-101 372.9 227 82.8
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 1.4e-94 352.1 1022 31.7
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 4.3e-91 340.5 506 42.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.4e-62 245.7 730 31.2
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.1e-59 236.1 196 61.2
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 1.0e-44 186.4 348 36.5
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 2.3e-44 185.3 108 83.3
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 2.2e-42 178.7 107 82.2
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 3.7e-42 177.9 232 43.1
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 3.1e-41 174.9 271 45.8
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.2e-34 152.1 91 83.5
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 6.1e-29 134.0 150 50.0
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 9.7e-27 126.7 346 38.4
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 8.5e-23 113.6 323 31.3
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 7.2e-22 110.5 73 71.2
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.2e-11 76.6 47 83.0
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 6.3e-10 70.9 89 41.6
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 5.4e-09 67.8 89 43.8
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 1.2e-08 66.6 95 40.0
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.2e-08 66.6 100 38.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 4.5e-08 64.7 89 42.7
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 5.9e-08 64.3 89 39.3
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 7.8e-08 63.9 89 40.4
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.3e-07 63.2 95 38.9
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 1.7e-07 62.8 93 39.8
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 2.3e-07 62.4 89 39.3
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 5.0e-07 61.2 95 38.9
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 5.0e-07 61.2 63 42.9
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 5.0e-07 61.2 64 46.9
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 5.0e-07 61.2 64 46.9
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 6.6e-07 60.8 89 38.2
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 8.6e-07 60.5 81 39.5
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 8.6e-07 60.5 81 38.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 8.6e-07 60.5 89 39.3
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 8.6e-07 60.5 64 45.3
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.1e-06 60.1 95 37.9
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 1.5e-06 59.7 89 38.2
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 1.5e-06 59.7 89 38.2
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.5e-06 59.7 81 40.7
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.9e-06 59.3 89 37.1
HPP92_003096 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.9e-06 59.3 134 33.6
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 3.3e-06 58.5 90 38.9
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 3.3e-06 58.5 66 48.5
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 4.3e-06 58.2 91 38.5
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 4.3e-06 58.2 91 38.5
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 4.3e-06 58.2 89 37.1
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 5.6e-06 57.8 64 42.2
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 5.6e-06 57.8 89 37.1
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 7.3e-06 57.4 82 41.5
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 9.5e-06 57.0 89 36.0
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 9.5e-06 57.0 81 39.5
Gohir.D08G274700 Gossypium hirsutum HOM05D002170 ORTHO05D005003 9.5e-06 57.0 74 43.2
Gorai.004G293200 Gossypium raimondii HOM05D002170 ORTHO05D005003 9.5e-06 57.0 74 43.2
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 9.5e-06 57.0 88 36.4
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 9.5e-06 57.0 89 37.1


User provided reference genes

Program Settings