Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 8.2e-296 1019.6 509 100.0
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.2e-177 627.1 381 80.1
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.6e-177 626.7 389 79.2
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 3.5e-177 625.5 380 79.5
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 2.5e-175 619.4 379 79.9
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 9.4e-175 617.5 380 78.7
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 9.4e-175 617.5 389 77.9
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 8.0e-174 614.4 394 78.4
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.0e-173 614.0 381 78.5
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.4e-173 613.6 381 79.8
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.8e-173 613.2 398 76.9
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 2.3e-173 612.8 363 80.4
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 3.0e-173 612.5 363 80.7
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 4.0e-173 612.1 363 80.4
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 7.5e-172 607.8 385 77.7
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.3e-171 607.1 373 79.4
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.2e-171 606.3 365 79.7
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 2.2e-171 606.3 381 77.2
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 3.7e-171 605.5 378 79.1
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.4e-170 603.6 372 77.7
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 1.8e-170 603.2 371 80.6
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 4.1e-170 602.1 369 79.4
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 7.0e-170 601.3 390 77.7
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 9.1e-170 600.9 372 78.8
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 2.7e-169 599.4 388 76.0
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 4.5e-169 598.6 384 76.3
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 4.5e-169 598.6 381 78.0
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 5.9e-169 598.2 373 78.3
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 5.9e-169 598.2 390 76.2
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 7.7e-169 597.8 370 77.3
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 2.2e-168 596.3 387 76.7
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.5e-167 592.8 383 77.3
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 5.5e-167 591.7 379 77.3
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 4.7e-166 588.6 385 75.3
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 4.7e-166 588.6 380 77.1
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 8.0e-166 587.8 385 75.1
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 8.0e-166 587.8 371 76.5
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.4e-165 587.0 382 76.7
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.4e-165 587.0 389 75.3
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.4e-165 587.0 366 77.9
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.8e-165 586.6 380 77.1
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.8e-165 586.6 378 76.7
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.3e-165 586.3 382 74.6
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.3e-165 586.3 382 74.6
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 5.2e-165 585.1 366 77.9
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.2e-164 583.9 368 77.4
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 2.6e-164 582.8 385 75.3
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 2.6e-164 582.8 364 78.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 3.4e-164 582.4 374 76.5
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.4e-164 582.4 371 77.6
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 7.5e-164 581.3 377 75.6
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.3e-163 580.5 380 76.6
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.7e-163 580.1 391 72.6
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 3.7e-163 578.9 420 69.5
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 7.0e-162 574.7 370 76.2
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.2e-161 573.9 362 78.7
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.2e-161 573.9 388 74.0
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.5e-161 572.4 364 76.4
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 7.7e-161 571.2 381 76.1
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 1.3e-160 570.5 405 70.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 5.0e-160 568.5 407 70.5
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 5.0e-160 568.5 382 73.6
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 3.3e-159 565.8 390 72.8
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 7.2e-159 564.7 376 75.0
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.0e-157 558.9 374 74.1
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.2e-155 553.1 381 73.8
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 7.0e-154 548.1 368 74.7
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.7e-152 543.5 342 78.1
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 5.0e-152 542.0 386 72.3
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 2.5e-151 539.7 369 72.1
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 2.5e-151 539.7 371 72.8
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 3.3e-151 539.3 376 73.1
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 5.6e-151 538.5 376 73.1
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.2e-150 537.3 394 71.3
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 8.3e-147 524.6 389 68.6
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.1e-146 524.2 378 70.6
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 6.0e-145 518.5 385 67.5
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.9e-143 513.5 370 71.1
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 2.1e-142 510.0 385 65.7
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.1e-142 510.0 345 73.6
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.4e-141 507.3 379 66.8
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 4.0e-141 505.8 294 83.7
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 6.8e-141 505.0 372 69.6
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 2.6e-140 503.1 385 66.0
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 4.4e-140 502.3 388 66.2
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 7.5e-140 501.5 389 65.8
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 1.3e-139 500.7 382 65.4
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 4.9e-139 498.8 389 66.1
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 8.3e-139 498.0 323 75.2
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.1e-138 497.7 368 67.1
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 1.2e-137 494.2 363 67.2
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.6e-137 493.8 387 64.9
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 2.1e-137 493.4 377 65.3
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 6.6e-136 488.4 383 64.5
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 8.6e-136 488.0 381 64.8
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 8.6e-136 488.0 381 64.8
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 8.6e-136 488.0 325 74.5
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 8.6e-136 488.0 386 65.3
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 4.7e-134 482.3 332 71.7
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.0e-132 476.9 424 61.6
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.6e-132 476.5 383 63.7
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 4.4e-132 475.7 384 62.8
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 7.8e-129 464.9 336 67.9
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 9.5e-127 458.0 364 62.4
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 2.1e-126 456.8 337 69.1
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.4e-125 454.1 424 60.1
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.3e-123 447.6 374 62.8
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 9.2e-122 441.4 328 69.5
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.2e-121 441.0 372 61.3
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.9e-115 419.9 253 79.4
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.4e-114 417.5 260 78.1
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 4.6e-105 386.0 346 60.1
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 5.3e-101 372.5 327 60.2
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 8.2e-94 348.6 211 79.6
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 5.3e-85 319.3 396 46.2
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 6.9e-85 318.9 356 50.3
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.0e-83 315.1 391 50.1
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 4.3e-79 299.7 298 53.0
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 7.4e-79 298.9 163 80.4
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.3e-75 288.1 225 67.1
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.4e-74 284.6 270 50.4
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 5.5e-74 282.7 135 94.1
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.1e-71 275.0 271 56.8
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 3.7e-70 270.0 410 42.0
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 4.5e-52 209.9 259 49.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 3.0e-48 197.2 154 67.5
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 8.6e-35 152.5 156 59.0
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 1.9e-29 134.8 112 65.2
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 9.2e-29 132.5 79 81.0
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.0e-27 129.0 80 75.0
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.3e-27 127.9 295 33.2
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.5e-23 115.2 270 30.7
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 1.7e-19 101.7 210 32.9
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.3e-19 101.3 59 81.4
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.2e-17 95.5 80 65.0
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.8e-17 94.4 52 82.7
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.4e-16 92.0 75 61.3
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.1e-13 82.4 87 55.2
Dinv00162 Davidia involucrata HOM05D005140 ORTHO05D006288 5.1e-11 73.6 43 81.4
Dinv25151 Davidia involucrata HOM05D005140 ORTHO05D006288 5.1e-11 73.6 43 81.4
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 2.2e-06 58.2 77 45.5


User provided reference genes

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