Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1638.2 804 100.0
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1309.3 786 81.4
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1309.3 785 81.1
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1300.4 783 81.2
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1298.1 786 80.5
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1297.3 783 81.0
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 786 79.4
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1281.2 787 79.5
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 785 79.1
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1276.2 785 79.2
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 787 78.8
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1274.2 785 79.1
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1273.5 782 80.3
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1272.3 785 79.0
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1270.0 786 78.9
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1269.6 789 78.8
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 785 79.0
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 787 79.2
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1268.1 786 79.1
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1265.4 788 78.4
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 789 78.6
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1264.2 775 79.6
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1261.5 786 78.2
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1260.7 785 78.5
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1258.4 787 78.8
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 788 78.6
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1255.7 783 78.3
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1252.7 788 77.8
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 787 77.3
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1251.5 785 78.1
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1250.7 783 78.0
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1249.2 787 77.9
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 784 77.2
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1247.6 786 78.5
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1246.1 786 78.5
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1245.3 787 76.5
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1245.3 786 78.2
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1245.3 784 77.2
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1245.3 784 77.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1243.4 788 77.2
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 784 76.5
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1237.6 787 77.8
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1237.2 792 76.8
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1234.6 787 77.6
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1233.0 783 77.1
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 786 77.6
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1230.3 782 76.9
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1227.6 784 76.1
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1227.2 785 76.8
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1227.2 921 68.1
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1226.5 799 76.0
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1224.9 784 75.8
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1224.2 783 76.6
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 781 76.3
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1221.5 785 76.9
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1220.7 786 76.6
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1220.3 796 75.9
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1220.3 783 75.5
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1219.5 781 75.9
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1219.5 786 76.5
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1217.2 784 75.6
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1216.1 781 75.4
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1212.2 780 75.5
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 785 76.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 786 75.3
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1210.3 781 75.7
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1208.0 864 69.7
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1199.1 837 71.0
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1188.3 799 72.8
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1181.4 786 75.3
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1176.4 788 72.8
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1175.6 784 74.5
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1174.5 931 65.3
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1170.2 780 72.9
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1168.7 785 73.1
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1168.7 786 73.0
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1166.4 785 72.7
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1166.0 785 72.9
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1164.4 787 73.2
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1164.1 786 72.5
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1164.1 786 72.9
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1162.9 837 69.4
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1162.1 784 72.4
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1159.1 786 72.1
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1159.1 786 72.1
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1157.1 786 72.3
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1156.7 786 71.9
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1156.7 786 72.1
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1156.4 787 72.4
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1156.0 792 73.4
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1155.6 786 72.4
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1155.2 787 72.0
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1154.8 784 72.1
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1153.3 801 71.5
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1152.9 787 71.8
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1150.6 787 72.2
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1149.4 786 71.6
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1140.2 771 73.9
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1139.8 788 72.2
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1137.1 777 72.1
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1134.8 759 74.6
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1129.4 782 71.0
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1126.3 783 71.6
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1119.4 785 68.9
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1117.8 786 68.7
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1109.0 784 68.2
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1105.5 786 68.3
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1091.6 939 61.9
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.7e-311 1071.6 784 69.8
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 1.6e-301 1039.3 824 65.8
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 1.6e-298 1029.2 803 63.4
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 2.1e-290 1002.3 795 63.4
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 2.2e-287 992.3 582 83.2
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 6.7e-276 954.1 785 61.3
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 3.9e-268 928.3 780 60.5
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.1e-228 795.8 760 57.9
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 9.0e-188 661.4 389 81.2
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.9e-178 629.8 832 43.1
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 8.8e-159 565.1 809 41.0
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 5.5e-145 519.2 784 42.1
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.2e-138 497.3 851 38.0
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.5e-137 494.6 927 34.5
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 2.1e-120 437.6 404 54.7
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 8.3e-109 399.1 360 61.9
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 1.1e-97 362.1 283 63.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 5.2e-95 353.2 210 76.2
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.2e-77 294.7 223 67.3
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 9.3e-76 289.3 201 71.1
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 7.4e-73 279.6 171 78.9
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 6.7e-58 229.9 303 44.6
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 6.1e-51 206.8 141 72.3
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.8e-40 170.6 109 74.3
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 4.1e-39 167.5 193 52.8
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 4.1e-39 167.5 101 75.2
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 2.5e-36 158.3 105 65.7
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.1e-35 155.2 270 39.6
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.1e-31 141.0 97 71.1
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.0e-30 138.7 178 47.2
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 5.9e-30 137.1 181 45.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.4e-26 125.9 80 75.0
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.8e-26 125.6 118 55.9
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 8.8e-26 123.2 114 52.6
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 8.8e-26 123.2 198 40.9
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.8e-24 118.2 122 59.0
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 5.3e-23 114.0 58 86.2
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 7.0e-23 113.6 262 30.2
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.8e-21 107.8 106 55.7
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 8.5e-21 106.7 69 73.9
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.9e-20 105.5 146 49.3
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.2e-19 102.8 79 74.7
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.4e-17 94.7 50 84.0
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 5.7e-17 94.0 59 78.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 9.8e-17 93.2 72 65.3
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 1.4e-15 89.4 68 69.1
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 9.1e-15 86.7 47 76.6
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 2.5e-12 78.6 57 68.4
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 4.7e-11 74.3 59 52.5
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.7e-08 64.7 57 63.2
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.3e-08 63.9 57 63.2
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 6.3e-08 63.9 57 63.2
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 8.3e-08 63.5 69 56.5
Rhsim05G0038700 Rhododendron simsii HOM05D031300 ORTHO05D339751 1.4e-07 62.8 157 32.5
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 2.4e-07 62.0 54 64.8
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.0e-07 60.5 54 63.0
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.0e-07 60.5 54 63.0
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.0e-07 60.5 54 63.0
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 7.0e-07 60.5 54 63.0
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 9.2e-07 60.1 34 79.4
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 3.5e-06 58.2 76 44.7
BcaC02g07665 Brassica carinata HOM05D001091 ORTHO05D001020 4.5e-06 57.8 289 22.5


User provided reference genes

Program Settings