Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 0.0e+00 1280.0 686 100.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 2.2e-291 1005.4 745 75.3
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 5.0e-288 994.2 703 77.1
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 5.5e-287 990.7 743 75.0
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 2.0e-284 982.2 741 75.2
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 7.0e-282 973.8 740 72.3
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 1.2e-281 973.0 742 73.6
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.9e-281 970.7 743 75.0
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 5.5e-279 964.1 738 74.1
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 7.2e-279 963.8 742 73.3
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 5.2e-277 957.6 730 73.2
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 2.6e-276 955.3 745 72.1
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 5.7e-276 954.1 759 72.1
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 2.8e-275 951.8 743 73.8
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 4.8e-275 951.0 739 71.9
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 8.3e-275 950.3 796 68.5
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.1e-274 949.9 744 73.0
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 1.8e-274 949.1 740 71.9
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 4.1e-274 948.0 705 76.0
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 1.2e-273 946.4 747 71.4
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 1.2e-273 946.4 770 70.8
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 4.5e-273 944.5 738 73.4
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 2.9e-272 941.8 733 72.6
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 1.1e-271 939.9 741 69.9
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 2.3e-269 932.2 713 72.1
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 4.0e-269 931.4 733 71.9
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 5.2e-269 931.0 684 75.0
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 5.2e-269 931.0 741 71.3
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 5.7e-268 927.5 649 77.0
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 5.7e-268 927.5 690 74.9
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.1e-266 923.3 699 73.1
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.3e-264 916.4 739 70.9
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 6.6e-264 914.1 764 67.9
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 8.6e-264 913.7 705 71.1
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.1e-263 913.3 739 70.6
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 7.3e-263 910.6 740 69.6
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 2.8e-262 908.7 749 69.7
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.4e-261 906.4 736 69.7
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 3.0e-261 905.2 749 69.4
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 5.2e-261 904.4 807 66.5
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 5.2e-261 904.4 739 69.4
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 6.8e-261 904.0 733 69.0
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 8.9e-261 903.7 740 69.7
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.3e-259 899.8 740 70.3
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.3e-259 899.8 749 68.9
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 1.8e-258 896.0 743 68.6
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 9.2e-258 893.6 734 69.2
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 1.2e-257 893.3 737 68.2
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.0e-256 890.2 731 69.8
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 4.3e-255 884.8 730 69.5
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 8.0e-254 880.6 740 70.5
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.4e-253 879.8 645 74.9
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 3.1e-253 878.6 732 67.9
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 6.8e-253 877.5 733 67.9
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.4e-252 874.8 664 72.0
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 1.3e-251 873.2 671 70.8
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 3.7e-251 871.7 738 67.2
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 1.1e-250 870.2 731 68.5
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 2.4e-250 869.0 579 77.0
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 4.1e-250 868.2 754 65.1
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.0e-248 863.6 738 68.2
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.3e-248 863.2 738 68.3
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 1.3e-248 863.2 695 68.6
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 3.9e-248 861.7 733 65.9
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 2.5e-247 859.0 662 70.8
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.5e-247 859.0 719 68.6
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 4.3e-247 858.2 733 67.8
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 9.5e-247 857.1 609 74.2
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 6.2e-246 854.4 706 67.3
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 2.3e-245 852.4 734 67.7
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.2e-244 850.1 479 87.3
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 4.4e-244 848.2 724 65.9
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.7e-243 846.3 655 69.9
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 3.7e-243 845.1 717 69.0
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 4.9e-243 844.7 653 70.0
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 4.9e-243 844.7 653 70.1
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.4e-243 844.3 736 67.3
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 1.1e-242 843.6 734 67.6
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 7.8e-241 837.4 629 73.9
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 1.5e-239 833.2 629 71.5
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.5e-239 832.4 480 84.6
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 1.8e-237 826.2 666 67.1
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 2.3e-237 825.9 734 61.7
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 3.1e-237 825.5 636 70.3
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.2e-236 823.5 735 63.1
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.5e-236 823.2 636 70.1
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 2.0e-236 822.8 742 65.8
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.3e-232 810.1 497 80.1
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 4.3e-231 805.1 784 58.3
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.4e-229 799.3 735 64.4
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.2e-227 792.7 751 63.4
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 2.2e-227 792.7 738 61.1
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 1.7e-219 766.5 714 62.9
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 8.1e-206 721.1 661 61.0
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.1e-205 719.2 635 68.3
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.5e-199 700.3 751 54.2
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.7e-199 698.4 716 60.8
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.6e-196 689.5 653 63.4
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 3.4e-196 689.1 475 69.9
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 3.6e-193 679.1 663 58.5
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 7.7e-188 661.4 485 67.6
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.0e-187 661.0 383 84.1
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 9.1e-173 611.3 344 84.6
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 2.5e-170 603.2 541 56.0
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 2.8e-158 563.1 493 56.4
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 4.1e-157 559.3 472 58.1
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 6.3e-150 535.4 360 72.8
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.8e-145 520.0 557 61.0
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.2e-136 489.2 548 59.1
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 3.3e-130 469.9 440 59.8
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 4.9e-126 456.1 501 48.3
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.0e-115 421.8 527 45.5
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.6e-105 386.7 255 71.4
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 2.0e-103 380.9 517 44.1
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.3e-102 378.3 214 86.0
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 2.1e-92 344.4 179 91.1
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 4.6e-92 343.2 490 39.2
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 3.3e-90 337.0 387 61.8
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 1.1e-74 285.4 263 59.7
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.1e-74 285.4 347 60.5
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.2e-59 233.4 172 68.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 9.1e-56 222.6 157 67.5
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.9e-45 188.3 98 89.8
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.9e-39 166.8 325 43.1
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 3.3e-29 134.4 235 51.9
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 6.4e-25 120.2 76 82.9
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.6e-23 115.5 251 44.6
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 6.0e-23 113.6 239 45.6
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-21 109.4 75 74.7
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.3e-21 107.8 307 39.7
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.8e-15 86.7 145 46.9
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-14 85.9 340 32.1
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 8.6e-14 83.2 142 45.8
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 1.9e-13 82.0 113 61.9
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 7.5e-10 70.1 141 40.4
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.2e-07 62.8 109 43.1
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.3e-06 58.5 212 42.9


User provided reference genes

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