Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1357.4 700 100.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1192.9 708 86.6
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 708 85.7
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 708 85.5
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1171.8 708 84.2
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1170.6 708 85.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 708 84.5
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 697 85.7
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 711 84.8
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1159.8 697 85.2
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1155.2 697 84.9
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 685 85.7
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 697 83.9
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 708 82.9
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 708 83.2
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 708 82.9
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 708 83.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 708 82.1
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 708 82.8
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 692 84.5
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 708 82.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 708 82.8
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 686 85.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 697 83.4
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 697 83.4
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1137.1 701 82.5
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1137.1 719 81.9
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 694 83.1
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1134.8 699 83.1
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1134.0 701 83.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1133.6 699 83.0
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 699 83.0
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 698 82.1
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 736 79.5
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1132.9 697 82.6
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 731 81.0
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 697 82.8
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1129.4 694 82.7
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 685 83.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 685 83.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 685 83.9
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 698 83.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 735 79.6
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 708 82.5
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1124.8 685 83.4
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 687 83.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 685 83.2
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 671 85.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 696 81.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 687 83.7
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 714 81.9
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 708 80.4
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 698 81.1
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 698 81.1
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 693 82.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 708 79.9
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 690 82.3
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 706 80.2
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 708 79.8
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1115.9 693 81.5
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 691 81.8
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1114.8 698 80.8
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 698 81.1
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1114.0 698 80.8
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 699 81.0
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 700 82.1
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1112.1 711 80.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 703 81.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1109.7 693 81.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1109.4 708 79.8
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 685 82.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1107.0 770 76.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1101.7 685 82.0
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1101.3 709 79.4
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1100.1 685 81.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1099.3 708 79.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 708 80.1
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1099.0 686 82.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1097.0 726 78.5
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1096.6 709 79.4
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1092.4 696 79.9
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1090.5 708 79.8
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1088.2 702 81.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1087.4 710 79.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1086.2 740 75.7
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1085.9 668 82.5
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1084.3 684 80.6
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1081.2 658 83.9
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1077.4 684 79.5
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 9.6e-312 1073.2 682 80.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.9e-311 1072.0 688 79.7
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.1e-309 1066.2 696 78.2
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 8.9e-309 1063.1 740 75.1
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 9.9e-308 1059.7 696 77.6
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 7.8e-305 1050.0 740 74.9
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.6e-300 1033.5 697 75.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.1e-296 1020.8 713 73.6
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.8e-293 1012.3 696 74.6
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.5e-287 991.9 746 69.3
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.2e-282 974.9 631 80.3
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.4e-274 949.5 624 78.7
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 6.0e-273 944.1 591 80.7
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.4e-266 922.9 689 67.8
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 1.4e-266 922.9 689 67.8
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 4.3e-263 911.4 700 65.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.4e-258 896.3 584 77.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.6e-257 891.7 694 65.4
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.0e-256 890.2 691 66.1
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.3e-251 873.2 589 76.6
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 5.0e-251 871.3 683 69.1
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.1e-247 860.1 554 78.9
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.5e-247 859.8 566 76.0
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.8e-245 852.8 667 68.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 6.7e-240 834.3 518 83.2
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 8.5e-227 790.8 493 82.8
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.2e-215 753.8 681 56.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 7.0e-205 718.0 692 53.2
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-195 687.2 454 81.1
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.6e-187 658.3 423 76.8
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.1e-144 516.2 328 77.1
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 3.4e-143 513.1 739 42.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 3.4e-135 486.5 755 36.7
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.3e-129 465.7 280 83.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.5e-119 433.0 252 84.5
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.1e-116 424.1 392 57.1
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 7.5e-114 415.6 252 81.7
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 9.8e-114 415.2 252 81.3
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.1e-112 410.2 237 84.4
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.6e-108 396.7 261 80.5
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 6.8e-107 392.5 740 34.5
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 3.3e-101 373.6 234 78.6
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 9.5e-101 372.1 249 78.7
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 4.9e-73 280.0 193 78.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.6e-71 275.0 201 70.6
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.3e-69 267.3 182 72.5
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-61 242.3 148 79.1
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.3e-61 240.7 196 65.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.7e-57 228.4 192 68.2
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 8.4e-57 226.1 164 70.1
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.8e-54 218.4 214 58.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 9.6e-53 212.6 176 68.8
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.5e-50 205.3 130 80.8
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.9e-49 200.3 122 84.4
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 6.4e-49 199.9 155 59.4
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.8e-46 191.8 114 86.8
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.4e-43 181.4 111 89.2
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 4.0e-43 180.6 104 81.7
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.2e-39 169.1 489 27.2
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 7.9e-39 166.4 111 76.6
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 5.1e-30 137.1 100 71.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.1e-29 136.0 143 56.6
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.8e-28 131.3 100 69.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.8e-28 131.3 100 69.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.5e-26 125.6 81 77.8
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 2.6e-26 124.8 72 88.9
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.4e-24 119.0 127 55.1
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.0e-22 111.3 76 76.3
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 4.4e-21 107.5 63 79.4
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.8e-20 104.8 57 86.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 3.7e-20 104.4 59 78.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 3.1e-19 101.3 82 64.6
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.1e-19 101.3 59 81.4
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.3e-17 95.9 78 64.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 6.1e-15 87.0 65 69.2
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 2.2e-12 78.6 43 79.1
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.4e-11 75.1 61 68.9
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.2e-10 72.8 46 73.9
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.3e-09 69.3 40 85.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.0e-09 67.4 45 75.6


User provided reference genes

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