Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 9.0e-153 543.5 265 100.0
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 4.0e-100 368.6 265 70.2
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.8e-98 361.7 264 69.7
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 8.6e-95 350.9 265 66.4
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-94 350.1 266 67.7
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.9e-94 349.7 261 65.9
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.3e-94 349.0 266 67.3
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 4.2e-94 348.6 266 67.3
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 7.2e-94 347.8 268 65.7
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 7.2e-94 347.8 268 65.7
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 9.5e-94 347.4 260 68.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 4.7e-93 345.1 265 64.9
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 4.0e-92 342.0 261 67.0
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.5e-91 340.1 265 63.0
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 2.0e-91 339.7 259 65.3
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.4e-91 339.0 265 64.2
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.4e-91 339.0 267 66.3
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 3.4e-91 339.0 264 63.3
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.7e-90 336.7 265 64.9
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.9e-90 335.1 265 64.5
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.9e-90 335.1 261 65.9
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.9e-90 335.1 265 61.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 6.3e-90 334.7 266 62.8
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.1e-89 334.0 260 62.3
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.8e-89 333.2 265 62.3
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.4e-89 331.6 265 61.5
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.0e-89 331.3 258 64.0
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.0e-89 331.3 258 64.0
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 9.2e-89 330.9 263 62.4
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 9.2e-89 330.9 265 61.5
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.0e-88 329.7 258 63.2
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.0e-87 327.4 266 62.8
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.0e-87 327.4 265 60.8
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.3e-87 327.0 265 61.9
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.7e-87 326.6 265 60.4
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 3.9e-87 325.5 265 58.9
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 3.9e-87 325.5 265 61.9
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.3e-86 322.4 265 60.0
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.6e-86 321.6 260 60.8
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 7.3e-86 321.2 279 59.1
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 7.3e-86 321.2 267 60.7
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.2e-85 320.5 265 60.0
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.6e-85 320.1 258 61.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 2.1e-85 319.7 265 60.0
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 2.1e-85 319.7 265 59.6
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.7e-85 318.5 255 65.9
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.8e-84 316.6 266 59.0
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.3e-84 316.2 265 57.0
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 2.3e-84 316.2 265 61.5
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 6.8e-84 314.7 258 58.5
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 8.9e-84 314.3 273 58.6
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.5e-83 313.5 266 59.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.6e-83 312.8 256 57.4
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 5.8e-83 311.6 265 59.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 7.5e-83 311.2 260 58.1
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 7.5e-83 311.2 265 57.7
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 9.8e-83 310.8 261 59.4
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.7e-82 308.9 258 60.1
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-81 307.4 260 58.1
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 5.4e-81 305.1 260 56.9
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.0e-81 304.7 265 57.4
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.2e-80 303.9 265 58.9
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.5e-80 302.4 260 56.5
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.5e-80 302.4 293 54.9
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-80 302.0 260 56.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 6.0e-80 301.6 260 56.5
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.3e-79 299.7 260 55.8
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 3.9e-79 298.9 262 55.3
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 6.6e-79 298.1 258 56.6
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.5e-78 297.0 262 55.0
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.5e-78 297.0 262 55.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.5e-78 297.0 260 60.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.2e-77 293.9 257 56.8
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 2.1e-77 293.1 262 54.6
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 6.2e-77 291.6 260 53.8
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.8e-76 288.1 244 57.0
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 6.8e-76 288.1 260 55.0
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.4e-75 285.4 257 54.9
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 4.4e-75 285.4 257 54.9
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.4e-75 285.4 257 54.9
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 2.2e-74 283.1 257 55.6
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 6.4e-74 281.6 257 54.5
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 6.4e-74 281.6 257 53.3
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.1e-73 280.8 257 55.3
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.9e-73 280.0 257 55.3
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.9e-73 280.0 259 54.4
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.2e-73 279.3 257 52.9
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 3.2e-73 279.3 260 53.1
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 9.2e-73 277.7 259 52.9
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-72 277.3 258 51.2
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 2.7e-72 276.2 260 52.3
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 7.8e-72 274.6 222 61.7
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 7.8e-72 274.6 257 54.1
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 8.6e-71 271.2 257 52.5
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-70 270.8 259 52.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.9e-70 270.0 258 51.6
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.3e-70 269.2 260 51.5
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 4.3e-70 268.9 253 53.4
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.6e-70 268.5 257 52.9
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.1e-68 264.2 267 50.2
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.4e-68 263.8 258 48.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 8.3e-66 254.6 260 48.8
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.0e-63 247.7 141 82.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.7e-63 246.9 260 45.8
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.0e-63 246.1 136 87.5
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.5e-62 243.0 213 60.1
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 7.3e-62 241.5 212 59.9
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.2e-61 240.7 267 44.6
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.8e-61 239.6 212 58.5
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-61 239.6 257 49.8
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.7e-61 238.8 231 51.9
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 2.4e-60 236.5 255 43.5
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.5e-59 233.8 260 46.9
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.0e-59 233.4 266 50.0
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.0e-59 233.4 142 78.2
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-59 233.4 257 47.5
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 9.9e-59 231.1 216 55.1
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.9e-58 229.6 227 51.5
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.8e-58 229.2 209 57.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 3.8e-58 229.2 209 57.4
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.9e-55 219.2 236 50.4
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.6e-54 215.3 252 46.8
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.6e-53 212.6 211 49.3
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.5e-51 207.2 255 38.4
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.6e-51 206.5 211 51.2
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.3e-50 204.1 252 40.5
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 6.4e-50 201.8 201 53.7
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 8.4e-50 201.4 169 63.3
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-49 199.9 143 64.3
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 7.8e-48 194.9 205 50.2
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.0e-47 194.5 193 53.9
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 3.1e-44 183.0 256 37.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 6.9e-44 181.8 255 38.8
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-43 180.6 205 47.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.6e-43 179.9 259 36.3
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.6e-43 179.9 259 39.0
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 7.1e-41 171.8 187 51.3
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 9.3e-41 171.4 233 37.8
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 7.9e-40 168.3 261 32.6
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.5e-38 163.3 173 49.7
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 5.3e-36 155.6 165 50.3
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-35 152.1 175 48.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.9e-34 149.1 177 45.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 7.9e-32 141.7 215 40.0
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 7.9e-32 141.7 170 49.4
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-31 140.6 156 48.1
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 8.4e-26 121.7 143 46.9
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 5.5e-25 119.0 76 72.4
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-21 105.9 143 41.3
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 6.3e-21 105.5 81 59.3
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 4.1e-20 102.8 129 45.7
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 3.4e-19 99.8 129 43.4
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 2.7e-16 90.1 52 73.1
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 7.9e-16 88.6 52 69.2
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.0e-15 88.2 81 55.6
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.7e-13 79.7 66 56.1
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 4.8e-13 79.3 97 47.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 3.6e-08 63.2 55 54.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 3.6e-08 63.2 55 54.5
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 6.1e-08 62.4 54 55.6
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-07 61.6 148 31.1


User provided reference genes

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