Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 1.3e-185 652.9 321 100.0
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 3.1e-115 419.1 300 69.7
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 1.0e-113 414.1 299 69.6
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 2.2e-113 412.9 303 67.7
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 1.3e-110 403.7 318 65.7
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 5.1e-110 401.7 304 66.1
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 5.1e-110 401.7 304 66.1
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 6.7e-110 401.4 279 70.3
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 6.7e-110 401.4 303 67.0
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 8.7e-110 401.0 304 66.1
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 8.7e-110 401.0 286 68.9
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 2.5e-109 399.4 291 67.4
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 7.4e-109 397.9 303 66.0
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 1.1e-107 394.0 327 63.0
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 2.4e-107 392.9 280 70.0
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 3.1e-107 392.5 305 66.6
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.1e-107 392.5 290 66.9
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 6.9e-107 391.3 314 63.1
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 2.0e-106 389.8 298 65.8
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.6e-106 389.4 300 63.3
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 2.2e-105 386.3 250 71.6
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 5.0e-105 385.2 251 72.5
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 8.5e-105 384.4 303 63.4
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 1.1e-104 384.0 314 64.6
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 1.4e-104 383.6 304 64.8
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 1.9e-104 383.3 282 66.7
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 2.5e-104 382.9 332 59.6
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 2.5e-104 382.9 328 61.6
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 3.2e-104 382.5 264 71.2
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 5.5e-104 381.7 280 67.5
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 9.4e-104 380.9 308 64.6
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.1e-103 379.8 304 62.5
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 2.1e-103 379.8 313 62.9
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 2.1e-103 379.8 275 65.5
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 2.7e-103 379.4 303 62.7
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 3.6e-103 379.0 319 63.6
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 1.4e-102 377.1 278 66.9
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 2.3e-102 376.3 315 64.1
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 3.0e-102 375.9 293 65.9
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 3.9e-102 375.6 288 65.3
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 3.9e-102 375.6 288 65.3
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 5.1e-102 375.2 287 64.8
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 5.1e-102 375.2 297 64.6
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 5.1e-102 375.2 240 74.6
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 8.8e-102 374.4 307 63.5
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.5e-101 373.6 307 63.8
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 1.5e-101 373.6 316 64.6
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 1.5e-101 373.6 273 67.0
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 2.5e-101 372.9 288 64.9
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.3e-101 372.5 304 63.2
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 3.3e-101 372.5 297 63.0
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 4.3e-101 372.1 287 65.2
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 5.7e-101 371.7 288 64.9
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 1.3e-100 370.5 287 64.1
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 1.7e-100 370.2 287 64.1
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 1.7e-100 370.2 308 63.0
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 1.7e-100 370.2 304 62.2
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 2.8e-100 369.4 293 65.2
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 3.7e-100 369.0 317 60.3
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 6.3e-100 368.2 287 63.8
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 6.3e-100 368.2 290 62.1
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 1.1e-99 367.5 287 63.4
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 1.8e-99 366.7 249 70.7
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 2.4e-99 366.3 278 66.2
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 2.4e-99 366.3 303 61.1
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 2.4e-99 366.3 293 63.8
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 4.1e-99 365.5 290 62.8
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 5.3e-99 365.2 290 61.4
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 6.9e-99 364.8 288 64.2
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 6.9e-99 364.8 293 62.1
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 9.1e-99 364.4 293 64.2
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 9.1e-99 364.4 259 67.2
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 9.1e-99 364.4 316 59.2
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 2.0e-98 363.2 288 63.5
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 5.9e-98 361.7 287 62.4
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 5.9e-98 361.7 318 61.3
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 1.7e-97 360.1 292 63.7
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.7e-97 360.1 327 59.6
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 6.5e-97 358.2 293 62.1
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 6.5e-97 358.2 310 59.0
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 4.7e-95 352.1 304 58.9
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 3.3e-93 345.9 250 68.4
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 2.4e-91 339.7 305 56.1
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 7.0e-91 338.2 309 57.6
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 5.9e-90 335.1 317 57.7
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 8.5e-89 331.3 303 58.4
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 1.2e-87 327.4 287 60.6
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 2.2e-84 316.6 268 60.1
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 1.8e-83 313.5 316 52.5
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 4.5e-82 308.9 260 58.5
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 2.2e-81 306.6 253 61.3
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 2.2e-81 306.6 253 61.3
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 7.5e-77 291.6 261 55.9
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 9.7e-77 291.2 298 50.3
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 2.7e-74 283.1 254 54.3
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 1.5e-69 267.3 166 72.3
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 4.8e-68 262.3 256 49.2
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 7.7e-66 255.0 168 74.4
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 1.5e-64 250.8 279 51.3
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 3.7e-60 236.1 303 47.2
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 4.7e-55 219.2 297 45.5
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 4.6e-50 202.6 214 56.5
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 6.6e-49 198.7 118 80.5
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 8.6e-49 198.4 117 76.9
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 1.2e-47 194.5 117 76.9
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 5.2e-46 189.1 340 35.9
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 8.9e-46 188.3 109 79.8
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 3.4e-45 186.4 360 33.9
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 7.1e-43 178.7 186 53.8
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 7.6e-29 132.1 73 79.5
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 8.4e-28 128.6 96 63.5
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 2.1e-15 87.4 187 32.1
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.8e-14 84.3 43 81.4
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 3.5e-10 70.1 36 77.8
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 4.6e-10 69.7 160 31.9
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 3.1e-06 57.0 63 42.9
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 6.9e-06 55.8 81 39.5


User provided reference genes

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