Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 8.4e-196 686.8 338 100.0
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 8.4e-196 686.8 338 100.0
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.3e-151 540.0 365 76.2
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 2.6e-149 532.3 366 75.4
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 2.7e-146 522.3 366 74.6
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 4.0e-145 518.5 357 75.4
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 1.5e-144 516.5 360 73.9
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 4.4e-144 515.0 365 72.3
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 4.2e-139 498.4 362 71.3
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 4.4e-136 488.4 364 70.3
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 7.5e-136 487.6 364 70.3
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 1.8e-134 483.0 352 70.7
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 4.2e-131 471.9 341 69.5
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 2.1e-130 469.5 364 65.1
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 3.6e-130 468.8 358 67.6
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 6.8e-129 464.5 351 68.1
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 4.4e-128 461.8 367 65.1
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.7e-127 459.9 365 65.5
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 2.8e-127 459.1 328 70.7
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 4.9e-127 458.4 346 66.5
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.1e-126 457.2 365 64.1
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.4e-126 456.1 351 66.7
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 7.0e-126 454.5 371 62.8
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 7.0e-126 454.5 351 67.5
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 9.2e-126 454.1 351 67.0
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 1.6e-125 453.4 366 63.4
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 5.9e-125 451.4 361 64.8
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 1.7e-124 449.9 331 67.1
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 2.9e-124 449.1 354 67.2
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 3.8e-124 448.7 355 63.7
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.5e-123 446.0 387 61.8
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 5.6e-123 444.9 355 65.1
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 5.6e-123 444.9 358 64.8
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 9.5e-123 444.1 355 65.4
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 9.5e-123 444.1 323 69.3
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 1.6e-122 443.4 354 65.5
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 1.0e-121 440.7 360 63.9
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 1.5e-120 436.8 356 63.2
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 4.4e-120 435.3 371 63.3
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 5.7e-120 434.9 373 60.9
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 9.8e-120 434.1 355 65.1
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 1.3e-119 433.7 349 63.9
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 2.9e-119 432.6 367 61.3
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 4.9e-119 431.8 373 60.9
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 1.1e-118 430.6 359 63.2
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 4.1e-118 428.7 364 59.9
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 4.1e-118 428.7 373 60.6
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 9.2e-118 427.6 358 59.8
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 1.2e-117 427.2 320 65.6
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 1.6e-117 426.8 360 60.3
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 1.6e-117 426.8 369 59.6
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 2.0e-117 426.4 362 62.7
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 2.7e-117 426.0 350 62.6
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 2.7e-117 426.0 348 65.2
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 2.7e-117 426.0 369 59.6
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 5.9e-117 424.9 370 61.4
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 3.0e-116 422.5 359 61.3
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 3.9e-116 422.2 345 63.2
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 3.9e-116 422.2 360 61.1
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 1.9e-115 419.9 369 58.8
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 3.3e-115 419.1 367 62.4
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 5.6e-115 418.3 364 61.0
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 9.5e-115 417.5 358 60.6
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 4.7e-114 415.2 405 56.8
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.0e-113 414.1 315 68.3
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 1.8e-113 413.3 337 61.1
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 2.3e-113 412.9 350 60.9
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 4.0e-113 412.1 357 61.3
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 5.2e-113 411.8 363 60.1
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.5e-112 410.2 362 60.8
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 2.0e-112 409.8 331 61.0
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 4.4e-112 408.7 348 60.6
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 5.8e-112 408.3 351 61.8
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 1.3e-111 407.1 357 59.9
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 1.3e-111 407.1 346 62.4
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 2.2e-111 406.4 471 49.0
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 2.9e-111 406.0 366 61.2
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 3.7e-111 405.6 313 64.2
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 3.7e-111 405.6 351 61.8
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 4.9e-111 405.2 313 64.2
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 8.3e-111 404.4 313 63.9
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 1.1e-110 404.1 389 54.5
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 2.4e-110 402.9 383 56.9
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 5.4e-110 401.7 327 62.4
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 2.7e-109 399.4 319 65.5
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 1.2e-106 390.6 373 55.2
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 3.6e-106 389.0 329 62.9
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 3.6e-106 389.0 329 59.9
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 4.4e-104 382.1 335 59.7
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 1.7e-103 380.2 423 52.2
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 1.1e-102 377.5 354 55.9
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 3.2e-102 375.9 346 56.6
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 4.4e-96 355.5 309 62.1
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.7e-95 353.6 321 57.0
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 1.0e-92 344.4 321 55.8
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 2.3e-92 343.2 338 57.1
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 8.6e-92 341.3 257 68.9
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.7e-87 327.0 290 60.0
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 8.4e-87 324.7 300 58.3
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 3.5e-85 319.3 333 51.1
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 9.6e-83 311.2 310 52.3
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.0e-76 291.2 265 57.0
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 2.1e-69 266.9 457 37.4
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 6.5e-63 245.4 205 60.0
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.1e-62 244.6 187 63.6
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 2.1e-61 240.4 187 66.3
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.4e-49 201.1 160 63.8
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 6.9e-49 198.7 403 35.0
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 2.9e-47 193.4 282 43.6
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 6.1e-45 185.7 164 58.5
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 7.4e-35 152.1 137 59.1
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 1.2e-29 134.8 77 79.2
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 4.7e-29 132.9 138 52.9
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 1.1e-17 95.1 314 26.8
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 7.0e-17 92.4 271 26.9
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 5.5e-14 82.8 273 28.2
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 9.5e-14 82.0 322 24.2
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 1.0e-12 78.6 211 27.0
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 1.4e-12 78.2 351 24.5
ATR0796G062 Amborella trichopoda HOM05D006708 ORTHO05D008321 1.8e-12 77.8 335 24.5
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 3.0e-12 77.0 315 24.4
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 4.0e-12 76.6 319 23.8
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 4.0e-12 76.6 55 67.3
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 1.5e-11 74.7 319 22.3
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 2.0e-11 74.3 213 27.2
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 3.4e-11 73.6 202 25.7
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 3.4e-11 73.6 218 27.1
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 5.7e-11 72.8 345 22.9
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 1.3e-10 71.6 345 22.9
Medtr4g123970 Medicago truncatula HOM05D006708 ORTHO05D008321 1.3e-10 71.6 200 27.0
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 1.3e-10 71.6 238 26.5
TPR.G12542 Trifolium pratense HOM05D006708 ORTHO05D008321 1.3e-10 71.6 213 26.3
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 2.2e-10 70.9 200 26.0
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 2.2e-10 70.9 222 26.6
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 2.2e-10 70.9 336 22.9
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 3.7e-10 70.1 302 27.2
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 3.7e-10 70.1 319 22.9
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 4.9e-10 69.7 318 22.0
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 4.9e-10 69.7 279 26.9
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 8.3e-10 68.9 216 26.4
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 8.3e-10 68.9 176 28.4
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 8.3e-10 68.9 177 28.2
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 8.3e-10 68.9 214 25.2
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 8.3e-10 68.9 200 26.0
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 8.3e-10 68.9 316 25.0
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.1e-09 68.6 173 27.2
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 1.4e-09 68.2 176 28.4
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 1.4e-09 68.2 221 26.2
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 1.8e-09 67.8 319 23.2
Eucgr.B03960 Eucalyptus grandis HOM05D006708 ORTHO05D008321 3.1e-09 67.0 201 25.9
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 3.1e-09 67.0 200 25.5
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 7.0e-09 65.9 325 24.0
Aqoxy2G02504 Aquilegia oxysepala HOM05D006708 ORTHO05D008321 1.2e-08 65.1 200 26.5
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 1.6e-08 64.7 200 26.0
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 4.5e-08 63.2 270 24.4
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 7.8e-08 62.4 283 26.1
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 7.8e-08 62.4 191 27.2
TWI53G0094 Tripterygium wilfordii HOM05D006708 ORTHO05D008321 7.8e-08 62.4 217 25.3
MCO13G233 Micromonas commoda HOM05D006708 ORTHO05D008321 2.9e-07 60.5 276 26.4
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 2.9e-07 60.5 263 26.2
Nn5g28881 Nelumbo nucifera HOM05D005655 ORTHO05D007386 6.6e-07 59.3 272 26.1
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 1.9e-06 57.8 72 36.1
unitig_1.g29359 Utricularia gibba HOM05D006708 ORTHO05D008321 1.9e-06 57.8 101 30.7
unitig_747.g22054 Utricularia gibba HOM05D006708 ORTHO05D008321 1.9e-06 57.8 101 30.7


User provided reference genes

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