Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 1.3e-199 699.5 346 100.0
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 1.2e-120 437.2 286 78.0
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 7.7e-104 381.3 244 78.7
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 9.8e-99 364.4 244 74.6
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 1.3e-98 364.0 244 74.6
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.7e-98 363.6 244 73.8
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 2.2e-98 363.2 244 75.0
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 2.8e-98 362.8 244 74.2
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 8.3e-98 361.3 244 73.8
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.8e-97 360.1 244 74.2
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 1.8e-97 360.1 244 72.5
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.8e-97 360.1 243 73.7
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 2.4e-97 359.8 244 72.5
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 2.4e-97 359.8 244 73.8
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 3.1e-97 359.4 244 73.0
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 3.1e-97 359.4 244 73.0
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 4.1e-97 359.0 244 73.4
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 4.1e-97 359.0 244 73.4
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.1e-97 359.0 244 73.8
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 4.1e-97 359.0 244 73.8
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 4.1e-97 359.0 244 72.1
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 4.1e-97 359.0 329 59.0
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 7.0e-97 358.2 244 72.5
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 9.1e-97 357.8 244 73.0
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 9.1e-97 357.8 291 64.9
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 9.1e-97 357.8 329 58.7
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 9.1e-97 357.8 244 74.2
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 1.2e-96 357.5 249 72.3
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 1.2e-96 357.5 244 72.5
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.6e-96 357.1 244 73.4
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.6e-96 357.1 238 74.8
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 2.0e-96 356.7 244 73.0
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 2.7e-96 356.3 244 71.7
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.7e-96 356.3 244 72.1
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.7e-96 356.3 244 72.1
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 2.7e-96 356.3 244 72.1
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 2.7e-96 356.3 244 72.1
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 3.5e-96 355.9 244 73.4
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 4.5e-96 355.5 244 72.1
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 4.5e-96 355.5 244 72.1
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 4.5e-96 355.5 240 73.3
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 4.5e-96 355.5 244 72.1
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 7.7e-96 354.8 240 73.3
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.0e-95 354.4 244 72.1
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.3e-95 354.0 249 71.9
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 1.7e-95 353.6 244 71.7
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 1.7e-95 353.6 239 72.4
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 1.7e-95 353.6 244 71.7
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.7e-95 353.6 244 72.1
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.9e-95 352.8 238 73.9
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 3.8e-95 352.4 244 71.3
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 5.0e-95 352.1 243 72.4
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 5.0e-95 352.1 243 72.4
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 5.0e-95 352.1 244 70.9
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 6.6e-95 351.7 244 72.1
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 6.6e-95 351.7 240 71.2
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 8.6e-95 351.3 260 67.3
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 8.6e-95 351.3 244 70.5
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.1e-94 350.9 260 67.3
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 1.1e-94 350.9 244 70.5
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 1.1e-94 350.9 239 72.0
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 1.1e-94 350.9 243 71.2
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 1.5e-94 350.5 239 71.5
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 1.9e-94 350.1 239 72.0
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 1.9e-94 350.1 239 72.0
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 1.9e-94 350.1 244 70.9
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 2.5e-94 349.7 239 71.1
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 3.3e-94 349.4 243 71.2
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 3.3e-94 349.4 239 71.1
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 3.3e-94 349.4 239 71.1
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 3.3e-94 349.4 240 71.7
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 4.2e-94 349.0 239 72.0
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 4.2e-94 349.0 277 64.6
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 4.2e-94 349.0 244 70.1
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.2e-94 349.0 244 70.1
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.2e-94 349.0 244 70.1
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 4.2e-94 349.0 244 71.7
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 4.2e-94 349.0 244 70.9
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 7.2e-94 348.2 245 72.7
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 7.2e-94 348.2 258 69.4
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 7.2e-94 348.2 244 69.7
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 9.5e-94 347.8 239 70.7
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.2e-93 347.4 255 67.1
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 1.6e-93 347.1 239 70.7
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 1.6e-93 347.1 244 70.9
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 2.1e-93 346.7 239 71.5
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 2.1e-93 346.7 239 71.1
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 2.1e-93 346.7 240 71.7
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 3.6e-93 345.9 239 70.3
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 3.6e-93 345.9 244 70.1
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 4.7e-93 345.5 244 70.5
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 4.7e-93 345.5 244 69.3
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 6.1e-93 345.1 243 70.0
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 8.0e-93 344.7 244 68.0
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 8.0e-93 344.7 239 71.1
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 8.0e-93 344.7 244 69.7
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 8.0e-93 344.7 249 68.3
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 1.4e-92 344.0 244 69.7
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 1.8e-92 343.6 240 70.8
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 1.8e-92 343.6 280 62.5
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 2.3e-92 343.2 244 66.8
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 4.0e-92 342.4 253 69.6
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 6.8e-92 341.7 244 68.9
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 8.9e-92 341.3 254 67.3
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 8.9e-92 341.3 282 64.5
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 1.2e-91 340.9 240 70.0
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 1.2e-91 340.9 244 68.4
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 1.5e-91 340.5 238 71.8
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 2.6e-91 339.7 245 70.2
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 3.4e-91 339.3 289 62.6
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 3.4e-91 339.3 294 61.9
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 5.7e-91 338.6 244 68.0
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 9.8e-91 337.8 239 70.3
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 9.8e-91 337.8 239 67.4
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.3e-90 337.4 239 69.9
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 2.2e-90 336.7 253 68.0
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 2.2e-90 336.7 244 72.1
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 3.1e-89 332.8 231 71.9
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 3.1e-89 332.8 244 67.6
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 2.7e-88 329.7 279 61.6
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 1.0e-87 327.8 240 65.4
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 2.9e-87 326.2 231 71.0
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.6e-85 320.5 244 68.0
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 1.8e-84 317.0 244 66.4
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 4.0e-84 315.8 252 59.9
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 6.8e-84 315.1 230 70.4
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.3e-82 310.8 239 64.0
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 6.4e-82 308.5 280 57.5
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 1.4e-81 307.4 252 59.9
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 5.4e-81 305.4 244 64.8
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 2.0e-80 303.5 252 59.5
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.7e-79 300.4 244 64.3
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.0e-79 298.9 247 59.9
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.0e-79 298.9 247 59.9
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 6.6e-79 298.5 244 58.6
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.3e-78 296.2 284 55.3
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 1.5e-75 287.3 210 67.1
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 3.4e-75 286.2 242 57.4
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 9.8e-75 284.6 244 62.7
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 8.6e-71 271.6 258 58.5
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 7.3e-70 268.5 157 85.4
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.4e-67 259.6 244 58.2
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 1.1e-60 238.0 161 70.8
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.4e-60 236.9 245 52.2
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 2.0e-59 233.8 244 48.4
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 4.6e-56 222.6 210 57.6
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 5.1e-55 219.2 228 54.8
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 4.9e-50 202.6 195 58.5
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 8.7e-47 191.8 142 66.9
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.5e-40 169.9 193 48.2
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.6e-40 169.5 121 69.4
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.0e-39 168.3 140 62.9
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 2.4e-36 157.1 103 73.8
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 9.0e-36 155.2 110 70.0
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 6.4e-34 149.1 118 62.7
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 6.7e-31 139.0 98 67.3
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 3.8e-26 123.2 79 75.9
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.1e-25 121.7 132 51.5
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 9.3e-25 118.6 142 47.9
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 3.0e-23 113.6 189 41.8
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 3.9e-23 113.2 84 69.0
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 5.7e-22 109.4 87 62.1
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 7.4e-22 109.0 83 63.9
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 1.4e-20 104.8 108 55.6
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 3.6e-16 90.1 84 51.2
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 9.7e-14 82.0 61 63.9
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 9.7e-14 82.0 54 70.4
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 1.1e-12 78.6 56 69.6
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.1e-12 76.6 48 68.8
CANSAT25G3134 Cannabis sativa HOM05D003708 ORTHO05D004452 2.0e-11 74.3 47 76.6
arahy.Tifrunner.gnm1.ann1.UUKH7B Arachis hypogaea HOM05D003708 ORTHO05D000639 3.2e-09 67.0 48 58.3
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.6e-08 64.7 38 71.1
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.0e-07 62.0 38 73.7


User provided reference genes

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