Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.0e-194 684.1 644 100.0
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 1.1e-108 398.3 614 78.0
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 4.3e-108 396.4 614 77.5
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 2.1e-107 394.0 613 77.7
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 4.8e-107 392.9 613 77.3
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.8e-106 391.0 651 74.8
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 5.8e-105 386.0 665 72.8
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 3.8e-104 383.3 553 83.4
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 8.4e-104 382.1 652 73.6
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 2.7e-102 377.1 706 55.9
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 3.5e-102 376.7 644 73.4
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.5e-100 370.5 604 78.3
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 2.5e-100 370.5 620 75.2
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 2.6e-97 360.5 580 80.0
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 1.0e-96 358.6 570 80.7
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 2.9e-96 357.1 647 72.6
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 6.5e-96 355.9 647 73.9
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.1e-95 355.1 647 72.0
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 1.9e-95 354.4 565 79.5
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 2.5e-95 354.0 612 75.8
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 4.2e-95 353.2 596 76.8
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 5.5e-95 352.8 648 72.1
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 4.6e-94 349.7 650 72.0
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 1.8e-93 347.8 649 77.0
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 6.7e-93 345.9 590 76.6
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 6.7e-93 345.9 563 77.6
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 8.7e-93 345.5 581 78.1
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 8.7e-93 345.5 639 72.6
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.1e-92 345.1 632 76.6
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 1.5e-92 344.7 582 78.0
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 1.9e-92 344.4 595 76.6
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 4.3e-92 343.2 596 76.5
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 5.7e-92 342.8 647 72.8
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 7.4e-92 342.4 656 71.0
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 1.3e-91 341.7 647 72.0
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 1.3e-91 341.7 642 72.3
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 3.7e-91 340.1 573 68.6
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 6.3e-91 339.3 650 72.0
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 6.3e-91 339.3 665 70.7
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 6.9e-90 335.9 660 70.2
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 2.6e-89 334.0 591 76.0
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 5.9e-89 332.8 657 70.6
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 2.9e-88 330.5 593 74.9
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 2.5e-87 327.4 647 48.4
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 2.7e-86 323.9 565 76.6
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 3.6e-86 323.6 581 75.9
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 7.9e-86 322.4 529 81.7
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 7.9e-86 322.4 663 69.7
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.0e-85 322.0 592 75.0
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 8.8e-85 318.9 529 82.2
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 8.8e-85 318.9 595 73.8
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 1.5e-84 318.2 554 78.5
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 2.0e-84 317.8 533 78.8
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 2.8e-83 313.9 557 77.4
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 4.1e-82 310.1 627 71.8
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 4.1e-82 310.1 626 70.9
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 9.1e-82 308.9 635 70.9
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 1.5e-81 308.1 594 73.6
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 2.0e-81 307.8 564 76.1
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 2.0e-81 307.8 597 71.9
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.0e-80 305.4 574 73.3
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 1.0e-80 305.4 593 73.4
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.3e-80 305.1 578 74.7
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 1.3e-80 305.1 561 75.8
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 1.7e-80 304.7 596 72.5
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.2e-80 304.3 512 81.2
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 2.9e-80 303.9 512 81.2
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 2.9e-80 303.9 626 69.3
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 5.0e-80 303.1 558 76.0
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 5.0e-80 303.1 558 76.2
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 6.5e-80 302.8 559 76.0
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 6.5e-80 302.8 558 76.0
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 6.5e-80 302.8 559 76.0
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 1.4e-79 301.6 554 76.2
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 2.5e-79 300.8 580 73.1
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 3.2e-79 300.4 627 69.2
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 4.2e-79 300.1 550 76.5
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 7.2e-79 299.3 589 73.9
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 1.2e-78 298.5 557 76.7
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 6.1e-78 296.2 645 67.4
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 5.1e-77 293.1 578 73.7
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.5e-76 291.6 588 73.0
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 2.6e-76 290.8 521 78.1
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 2.2e-75 287.7 646 69.0
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 7.0e-74 282.7 536 40.9
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 1.3e-72 278.5 554 74.7
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 2.9e-72 277.3 606 71.0
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 2.9e-72 277.3 525 77.5
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 4.7e-70 270.0 484 77.9
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 8.0e-70 269.2 531 76.6
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 3.9e-69 266.9 621 57.5
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 6.7e-69 266.2 593 66.6
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 6.3e-67 259.6 216 66.7
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 1.4e-61 241.9 639 60.6
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.8e-61 241.5 187 68.4
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 2.9e-56 224.2 211 57.8
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 2.5e-55 221.1 637 62.3
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 7.2e-47 193.0 164 58.5
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 3.2e-42 177.6 471 75.8
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 1.0e-40 172.6 176 68.8
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 5.2e-37 160.2 178 53.9
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 8.3e-35 152.9 116 60.3
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.6e-33 148.7 188 48.9
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 2.0e-33 148.3 158 51.3
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 4.3e-31 140.6 110 61.8
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 5.2e-29 133.7 207 38.6
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 8.9e-29 132.9 112 55.4
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.2e-27 128.3 115 61.7
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 3.5e-25 120.9 191 47.1
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 3.9e-24 117.5 80 72.5
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.3e-23 114.0 80 70.0
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 1.7e-19 102.1 91 61.5
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 1.1e-18 99.4 127 40.2
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 5.1e-16 90.5 108 53.7
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 4.3e-15 87.4 153 35.9
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 1.2e-12 79.3 74 87.8
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 4.2e-10 70.9 110 35.5


User provided reference genes

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