Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1357.4 700 100.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1292.3 700 94.6
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1276.2 700 94.0
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1274.2 700 93.9
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1271.5 700 93.6
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1267.3 709 92.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1266.9 701 93.2
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1266.9 701 93.2
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1266.9 701 93.2
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1263.1 709 91.8
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1262.3 709 91.8
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1261.5 709 92.0
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1251.9 705 91.3
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1214.9 688 90.4
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1214.5 693 90.2
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1213.0 695 88.6
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1212.2 705 88.5
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1211.8 686 90.4
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1211.1 709 87.6
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1209.9 694 89.5
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1208.4 688 90.0
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1205.3 691 88.9
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1204.5 691 88.9
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 695 88.3
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1202.2 689 90.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1199.1 707 86.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1196.4 688 89.4
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1193.3 688 89.2
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1191.8 707 87.3
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1190.3 705 86.5
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1189.1 705 86.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1188.7 705 86.4
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1187.9 692 88.9
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1187.9 685 89.1
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1187.6 688 87.8
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 685 88.6
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1183.3 690 86.8
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1181.4 688 87.4
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1178.3 689 87.4
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1177.5 704 85.7
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 688 87.2
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1172.5 709 86.7
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1171.8 672 89.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 696 85.3
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 691 86.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1166.4 690 87.8
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 734 83.0
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1162.5 686 85.3
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 686 85.4
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 686 85.4
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 686 85.4
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 696 85.1
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 688 86.0
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 700 84.4
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 709 85.0
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 688 85.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 700 84.3
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 703 83.9
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1158.7 686 85.3
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1158.3 686 85.4
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 686 85.1
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 703 83.8
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 732 82.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 699 85.0
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 687 85.3
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 688 86.0
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1154.0 691 84.7
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1152.9 686 84.8
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1151.7 727 82.8
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 717 82.6
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 705 85.2
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 701 85.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1148.3 700 83.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 686 84.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 690 86.1
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 702 83.3
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 701 83.3
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 686 85.1
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 688 83.7
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 686 83.8
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 686 83.8
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1128.6 710 82.1
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1127.5 692 83.1
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1127.5 689 82.6
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1123.6 736 78.5
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 669 85.4
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 685 83.4
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 688 82.7
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 780 75.5
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1107.4 728 79.5
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1099.3 717 80.1
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1097.4 687 79.5
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1088.2 668 82.9
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1082.4 736 77.0
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.8e-312 1074.3 667 83.2
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 3.4e-311 1071.2 686 78.9
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 4.7e-310 1067.4 687 78.7
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 4.1e-306 1054.3 707 76.9
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.1e-301 1039.6 737 73.3
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.9e-288 994.6 611 83.1
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.9e-287 992.3 632 82.6
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.8e-285 985.7 592 84.3
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 9.0e-285 983.4 689 71.0
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 9.0e-285 983.4 689 71.0
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.9e-279 965.7 682 69.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.9e-275 951.8 692 69.7
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.7e-272 940.3 585 80.5
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 6.9e-269 930.6 684 74.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.0e-267 926.8 687 68.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 8.2e-262 907.1 566 78.6
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.3e-261 904.4 590 79.2
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 5.9e-260 901.0 555 82.9
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 4.1e-253 878.2 519 87.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 5.0e-251 871.3 676 70.0
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.0e-239 832.8 478 88.9
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.3e-227 793.5 682 58.4
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.8e-217 759.2 676 56.5
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.9e-202 709.9 467 81.6
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.3e-202 708.8 424 83.0
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.7e-155 551.6 329 81.8
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 4.1e-152 542.7 746 43.3
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 9.1e-144 515.0 755 38.5
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 5.3e-136 489.2 280 87.1
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.1e-128 463.0 273 84.6
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.5e-125 452.6 269 86.2
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 6.7e-123 445.7 359 63.0
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 2.5e-117 427.2 744 36.0
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.2e-115 419.5 233 88.8
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-113 414.8 237 88.2
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.7e-113 413.3 253 81.8
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.2e-109 399.1 259 81.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 8.6e-102 375.6 237 83.5
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.2e-80 303.9 182 79.7
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 3.3e-77 293.9 193 83.4
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 3.6e-76 290.4 215 69.3
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.1e-72 276.9 148 89.2
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.6e-70 269.2 195 71.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.5e-61 241.9 192 72.4
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 3.6e-60 237.3 155 67.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.7e-57 228.4 164 73.8
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 4.2e-56 223.8 223 59.2
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 9.3e-56 222.6 180 70.0
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 7.9e-55 219.5 156 71.8
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 3.7e-52 210.7 489 28.8
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 5.5e-48 196.8 114 88.6
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.6e-47 193.7 122 81.1
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 3.1e-43 181.0 104 87.5
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.3e-43 180.3 111 85.6
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 7.9e-39 166.4 111 74.8
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.1e-29 136.0 151 53.6
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 1.9e-29 135.2 100 70.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 3.7e-28 131.0 100 68.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 3.7e-28 131.0 100 68.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.9e-27 126.7 81 79.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 6.5e-25 120.2 71 84.5
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.6e-23 114.4 81 71.6
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 7.9e-23 113.2 104 61.5
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 2.6e-21 108.2 69 73.9
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.7e-20 105.5 91 59.3
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.2e-20 103.2 57 86.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.2e-18 99.4 77 64.9
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.5e-18 99.0 59 79.7
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.9e-17 94.7 65 72.3
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.2e-16 91.3 78 60.3
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.3e-12 79.3 84 50.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.8e-11 75.5 57 70.2
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.8e-11 75.5 40 95.0
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 4.5e-10 70.9 46 71.7
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.9e-09 68.2 59 67.8


User provided reference genes

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