Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0017254 Lotus japonicus HOM05D002336 ORTHO05D002526 1.5e-59 232.6 119 100.0
Lj6g0012975 Lotus japonicus HOM05D002336 ORTHO05D002526 6.7e-39 164.1 122 73.0
Phvul.006G135800 Phaseolus vulgaris HOM05D002336 ORTHO05D002526 3.2e-33 145.2 130 55.4
VMungo0540G1254 Vigna mungo HOM05D002336 ORTHO05D002526 3.9e-31 138.3 130 53.1
Glyma.15G121800 Glycine max HOM05D002336 ORTHO05D002526 6.2e-29 131.0 129 54.3
Glyma.09G016100 Glycine max HOM05D002336 ORTHO05D002526 4.1e-28 128.3 121 57.0
Psat1g171880 Pisum sativum HOM05D002336 ORTHO05D002526 2.0e-27 125.9 126 54.0
Ca_00777_v3 Cicer arietinum L. HOM05D000491 ORTHO05D000359 1.7e-26 122.9 126 54.8
Medtr2g027530 Medicago truncatula HOM05D002336 ORTHO05D002526 1.7e-26 122.9 127 52.8
Rhsim13G0138400 Rhododendron simsii HOM05D002336 ORTHO05D002526 2.9e-26 122.1 126 52.4
Manes.09G085000 Manihot esculenta HOM05D002336 ORTHO05D002526 9.3e-25 117.1 132 48.5
Lalb_Chr18g0057441 Lupinus albus HOM05D002336 ORTHO05D002526 7.9e-24 114.0 130 46.9
CSS0011496 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 1.0e-23 113.6 130 45.4
Lalb_Chr20g0119621 Lupinus albus HOM05D002336 ORTHO05D002526 1.0e-23 113.6 130 46.9
Cfa000015 Carpinus fangiana HOM05D002336 ORTHO05D002526 1.3e-23 113.2 130 48.5
CiPaw.10G083700 Carya illinoinensis HOM05D002336 ORTHO05D002526 1.8e-23 112.8 124 50.0
THA.LOC104823021 Tarenaya hassleriana HOM05D002336 ORTHO05D002526 2.3e-23 112.5 125 52.8
Actinidia02276 Actinidia chinensis HOM05D002336 ORTHO05D002526 5.1e-23 111.3 118 52.5
arahy.Tifrunner.gnm1.ann1.WK75UE Arachis hypogaea HOM05D002336 ORTHO05D002526 5.1e-23 111.3 121 49.6
Prupe.4G002300 Prunus persica HOM05D002336 ORTHO05D002526 5.1e-23 111.3 130 48.5
MD05G1363300 Malus domestica HOM05D002336 ORTHO05D002526 1.9e-22 109.4 129 49.6
Dinv07137 Davidia involucrata HOM05D002336 ORTHO05D002526 2.5e-22 109.0 119 49.6
MD10G1340900 Malus domestica HOM05D002336 ORTHO05D002526 2.5e-22 109.0 129 48.8
Sp2g12487 Schrenkiella parvula HOM05D002336 ORTHO05D002526 2.5e-22 109.0 128 45.3
MELO3C007997.2 Cucumis melo HOM05D002336 ORTHO05D002526 4.3e-22 108.2 136 47.8
A02p31610 Brassica napus HOM05D002336 ORTHO05D002526 5.7e-22 107.8 130 44.6
Eucgr.D00945 Eucalyptus grandis HOM05D002336 ORTHO05D002526 5.7e-22 107.8 124 48.4
Gorai.010G190700 Gossypium raimondii HOM05D002336 ORTHO05D002526 5.7e-22 107.8 130 46.2
Atru.chr1.2178 Acer truncatum HOM05D002336 ORTHO05D002526 7.4e-22 107.5 124 48.4
Gohir.D06G163600 Gossypium hirsutum HOM05D002336 ORTHO05D002526 7.4e-22 107.5 130 46.2
Thhalv10001026m.g Eutrema salsugineum HOM05D002336 ORTHO05D002526 1.3e-21 106.7 130 44.6
Hma1.2p1_0394F.1_g143540 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 1.6e-21 106.3 124 44.4
Thecc.06G242900 Theobroma cacao HOM05D002336 ORTHO05D002526 1.6e-21 106.3 124 47.6
CsaV3_6G048110 Cucumis sativus L. HOM05D002336 ORTHO05D002526 2.2e-21 105.9 136 47.1
Gohir.A06G157300 Gossypium hirsutum HOM05D002336 ORTHO05D002526 2.8e-21 105.5 130 44.6
RcHm_v2.0_Chr5g0000271 Rosa chinensis HOM05D002336 ORTHO05D002526 1.1e-20 103.6 122 47.5
vmacro03592 Vaccinium macrocarpon HOM05D002336 ORTHO05D002526 1.4e-20 103.2 125 48.8
BolC2t10989H Brassica oleracea HOM05D000111 ORTHO05D007071 1.8e-20 102.8 118 46.6
BraA02t08164Z Brassica rapa HOM05D002336 ORTHO05D002526 1.8e-20 102.8 118 46.6
GSVIVG01003467001 Vitis vinifera HOM05D002336 ORTHO05D002526 1.8e-20 102.8 124 46.8
Sed0019231 Sechium edule HOM05D002336 ORTHO05D002526 4.1e-20 101.7 136 45.6
AUR62015177 Chenopodium quinoa HOM05D002336 ORTHO05D002526 5.3e-20 101.3 132 43.2
Duzib235G1184 Durio zibethinus HOM05D002336 ORTHO05D002526 6.9e-20 100.9 130 45.4
PGR004G0111 Punica granatum HOM05D002336 ORTHO05D002526 6.9e-20 100.9 125 44.8
COL.COLO4_31953 Corchorus olitorius HOM05D002336 ORTHO05D002526 9.0e-20 100.5 127 46.5
Sc17g0008060 Simmondsia chinensis HOM05D002336 ORTHO05D002526 9.0e-20 100.5 124 46.8
EL10Ac9g22885 Beta vulgaris HOM05D002336 ORTHO05D002526 1.2e-19 100.1 130 43.8
arahy.Tifrunner.gnm1.ann1.7YIN9J Arachis hypogaea HOM05D002336 ORTHO05D002526 2.0e-19 99.4 112 45.5
Nn1g07725 Nelumbo nucifera HOM05D002336 ORTHO05D002526 2.0e-19 99.4 124 44.4
CANSAT56G2025 Cannabis sativa HOM05D002336 ORTHO05D002526 2.6e-19 99.0 121 43.8
FAN21G1357 Fragaria x ananassa HOM05D002336 ORTHO05D002526 2.6e-19 99.0 122 43.4
FvH4_3g00201 Fragaria vesca HOM05D002336 ORTHO05D002526 7.7e-19 97.4 122 43.4
MBI19_g01939_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 7.7e-19 97.4 123 43.9
MSTRG.16067 Avicennia marina HOM05D002336 ORTHO05D002526 1.3e-18 96.7 124 43.5
QL03p035757 Quercus lobata HOM05D002336 ORTHO05D002526 1.7e-18 96.3 132 45.5
unitig_32.g11410 Utricularia gibba HOM05D002336 ORTHO05D002526 1.7e-18 96.3 124 43.5
Duzib235G0330 Durio zibethinus HOM05D002336 ORTHO05D002526 2.2e-18 95.9 118 47.5
Peaxi162Scf00811g00442 Petunia axillaris HOM05D002336 ORTHO05D002526 2.9e-18 95.5 124 43.5
Ciclev10016499m.g Citrus clementina HOM05D002336 ORTHO05D002526 3.8e-18 95.1 138 40.6
Prupe.4G017900 Prunus persica HOM05D002336 ORTHO05D002526 6.5e-18 94.4 110 48.2
Hund21625 Selenicereus undatus HOM05D002336 ORTHO05D002526 6.5e-18 94.4 120 45.8
TWI38G0736 Tripterygium wilfordii HOM05D002336 ORTHO05D002526 6.5e-18 94.4 119 44.5
Carub.0007s2571 Capsella rubella HOM05D002336 ORTHO05D002526 8.5e-18 94.0 119 43.7
QL05p066607 Quercus lobata HOM05D002336 ORTHO05D002526 8.5e-18 94.0 132 41.7
Aqoxy3G03324 Aquilegia oxysepala HOM05D002336 ORTHO05D002526 1.4e-17 93.2 123 41.5
C02p48950 Brassica napus HOM05D002336 ORTHO05D002526 2.5e-17 92.4 110 45.5
AUR62014931 Chenopodium quinoa HOM05D002336 ORTHO05D002526 3.2e-17 92.0 126 43.7
MBI17_g08176_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 4.2e-17 91.7 125 42.4
CDE07G0676 Ceratophyllum demersum HOM05D002336 ORTHO05D002526 5.5e-17 91.3 122 41.0
ClCG01G021110 Citrullus lanatus HOM05D002336 ORTHO05D002526 5.5e-17 91.3 112 46.4
SalBow8G5548 Salvia bowleyana HOM05D002336 ORTHO05D002526 5.5e-17 91.3 97 47.4
SGA_v2.0_scaffold186G40142 Striga asiatica HOM05D002336 ORTHO05D002526 7.2e-17 90.9 126 41.3
Rhsim08G0216900 Rhododendron simsii HOM05D002659 ORTHO05D002526 9.4e-17 90.5 109 47.7
Sabra16G0008400 Salix brachista HOM05D000456 ORTHO05D000887 9.4e-17 90.5 127 44.1
Cc09_g00160 Coffea canephora HOM05D002336 ORTHO05D002526 1.2e-16 90.1 134 39.6
SGA_v2.0_scaffold7G03662 Striga asiatica HOM05D002336 ORTHO05D002526 1.2e-16 90.1 124 40.3
CAN.G1456.5 Capsicum annuum HOM05D002336 ORTHO05D002526 1.6e-16 89.7 124 41.1
Potri.016G003200 Populus trichocarpa HOM05D002336 ORTHO05D002526 1.6e-16 89.7 123 43.9
Ah.01g002070 Amaranthus hybridus HOM05D002336 ORTHO05D002526 2.7e-16 89.0 103 48.5
AL7G39320 Arabidopsis lyrata HOM05D002336 ORTHO05D002526 3.6e-16 88.6 119 40.3
AUR62017630 Chenopodium quinoa HOM05D002336 ORTHO05D002526 4.6e-16 88.2 100 48.0
Nitab4.5_0010199g0060 Nicotiana tabacum HOM05D002336 ORTHO05D002526 7.9e-16 87.4 143 39.9
Oeu025979.1 Olea europaea HOM05D002336 ORTHO05D002526 1.8e-15 86.3 125 43.2
CARHR290530 Cardamine hirsuta HOM05D002336 ORTHO05D002526 3.0e-15 85.5 121 39.7
Solyc04g015180.3 Solanum lycopersicum HOM05D002336 ORTHO05D002526 6.7e-15 84.3 124 40.3
ECA248G0907 Erigeron canadensis HOM05D002336 ORTHO05D002526 1.1e-14 83.6 122 39.3
Sopen04g007220 Solanum pennellii HOM05D002336 ORTHO05D002526 1.1e-14 83.6 124 40.3
Aa31sc504G30 Aethionema arabicum HOM05D002336 ORTHO05D002526 3.3e-14 82.0 110 38.2
FAN06G2551 Fragaria x ananassa HOM05D002336 ORTHO05D002526 4.3e-14 81.6 84 53.6
Migut.M01463 Erythranthe guttata HOM05D002336 ORTHO05D002526 5.7e-14 81.3 117 43.6
PSO210G4730 Papaver somniferum HOM05D002336 ORTHO05D002526 9.7e-14 80.5 123 38.2
FAN19G0974 Fragaria x ananassa HOM05D002336 ORTHO05D002526 2.8e-13 79.0 85 50.6
PSO210G5018 Papaver somniferum HOM05D002336 ORTHO05D002526 4.8e-13 78.2 123 37.4
Os02g0723300 Oryza sativa ssp. japonica HOM05D002336 ORTHO05D002526 1.4e-12 76.6 131 32.1
Zm00001eb189090 Zea mays HOM05D002336 ORTHO05D002526 1.4e-12 76.6 128 35.9
Oeu031381.1 Olea europaea HOM05D002336 ORTHO05D002526 3.1e-12 75.5 124 40.3
ECA220G0003 Erigeron canadensis HOM05D002336 ORTHO05D002526 4.1e-12 75.1 107 41.1
Nitab4.5_0000147g0240 Nicotiana tabacum HOM05D002336 ORTHO05D002526 4.1e-12 75.1 130 37.7
HanXRQChr01g0005731 Helianthus annuus HOM05D002336 ORTHO05D002526 6.9e-12 74.3 119 37.0
HPP92_000509 Vanilla planifolia HOM05D002336 ORTHO05D002526 1.3e-10 70.1 108 38.0
CSS0005906 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 2.5e-09 65.9 76 50.0
ECA149G0002 Erigeron canadensis HOM05D002336 ORTHO05D002526 5.5e-09 64.7 78 44.9
ATR1128G075 Amborella trichopoda HOM05D002336 ORTHO05D002526 1.6e-08 63.2 108 35.2
FAN06G5014 Fragaria x ananassa HOM05D002336 ORTHO05D002526 3.6e-08 62.0 84 41.7
ATR0751G251 Amborella trichopoda HOM05D002336 ORTHO05D002526 6.1e-08 61.2 104 37.5
AagrBONN_evm.TU.Sc2ySwM_344.663 Anthoceros agrestis HOM05D002336 ORTHO05D002526 3.9e-07 58.5 111 35.1
Lsat_1_v5_gn_1_130320 Lactuca sativa HOM05D002176 ORTHO05D002598 5.1e-07 58.2 78 39.7
Sc15g0006500 Simmondsia chinensis HOM05D002336 ORTHO05D002526 5.1e-07 58.2 110 35.5
PGR102G1725 Punica granatum HOM05D002336 ORTHO05D002526 6.7e-07 57.8 110 34.5
Mapoly0173s0018 Marchantia polymorpha HOM05D002336 ORTHO05D002526 8.8e-07 57.4 131 29.0
Sp6g33490 Schrenkiella parvula HOM05D002336 ORTHO05D002526 8.8e-07 57.4 110 35.5
ATR0618G064 Amborella trichopoda HOM05D002336 ORTHO05D002526 1.1e-06 57.0 111 33.3
A10p27560 Brassica napus HOM05D002336 ORTHO05D002526 1.1e-06 57.0 110 34.5
C09p67630 Brassica napus HOM05D002336 ORTHO05D002526 1.1e-06 57.0 110 34.5
BolC9t59525H Brassica oleracea HOM05D002336 ORTHO05D002526 1.1e-06 57.0 110 34.5
BraA10t44808Z Brassica rapa HOM05D002336 ORTHO05D002526 1.1e-06 57.0 110 34.5
CARHR203410 Cardamine hirsuta HOM05D002336 ORTHO05D002526 1.1e-06 57.0 110 35.5
THA.LOC104799288 Tarenaya hassleriana HOM05D002336 ORTHO05D002526 1.1e-06 57.0 110 34.5
AL6G20340 Arabidopsis lyrata HOM05D002336 ORTHO05D002526 2.0e-06 56.2 110 35.5
AT5G09920 Arabidopsis thaliana HOM05D002336 ORTHO05D002526 2.0e-06 56.2 110 35.5
Carub.0006s0836 Capsella rubella HOM05D002336 ORTHO05D002526 2.0e-06 56.2 110 35.5
MBI06_g12321_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 2.0e-06 56.2 110 35.5
BcaB08g37172 Brassica carinata HOM05D002336 ORTHO05D002526 2.6e-06 55.8 110 34.5
A02p00240 Brassica napus HOM05D002336 ORTHO05D002526 2.6e-06 55.8 110 34.5
A03p04330 Brassica napus HOM05D002336 ORTHO05D002526 2.6e-06 55.8 110 34.5
BolC2t06378H Brassica oleracea HOM05D002336 ORTHO05D002526 2.6e-06 55.8 110 34.5
BraA02t05008Z Brassica rapa HOM05D002336 ORTHO05D002526 2.6e-06 55.8 110 34.5
BraA03t09777Z Brassica rapa HOM05D002336 ORTHO05D002526 2.6e-06 55.8 110 34.5
Aqoxy6G00465 Aquilegia oxysepala HOM05D002336 ORTHO05D002526 3.3e-06 55.5 110 33.6
HPP92_022163 Vanilla planifolia HOM05D002336 ORTHO05D002526 3.3e-06 55.5 110 33.6
Actinidia27104 Actinidia chinensis HOM05D002336 ORTHO05D002526 4.4e-06 55.1 110 33.6
BcaB05g21520 Brassica carinata HOM05D002336 ORTHO05D002526 4.4e-06 55.1 110 34.5
FvH4_1g22750 Fragaria vesca HOM05D002336 ORTHO05D002526 4.4e-06 55.1 105 33.3
Hma1.2p1_0981F.1_g243690 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 4.4e-06 55.1 110 33.6
Hma1.2p1_1034F.1_g250410 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 4.4e-06 55.1 110 33.6
CSS0001624 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 5.7e-06 54.7 110 34.5
CSS0043110 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 5.7e-06 54.7 110 34.5
MELO3C020022.2 Cucumis melo HOM05D002336 ORTHO05D002526 5.7e-06 54.7 110 33.6
CsaV3_6G002410 Cucumis sativus L. HOM05D002336 ORTHO05D002526 5.7e-06 54.7 110 33.6
Eucgr.I00318 Eucalyptus grandis HOM05D002336 ORTHO05D002526 5.7e-06 54.7 110 32.7
Hund08720 Selenicereus undatus HOM05D002336 ORTHO05D002526 5.7e-06 54.7 110 33.6
TWI53G1839 Tripterygium wilfordii HOM05D002336 ORTHO05D002526 5.7e-06 54.7 110 33.6
CDE04G0107 Ceratophyllum demersum HOM05D002336 ORTHO05D002526 7.4e-06 54.3 110 33.6
ClCG11G005590 Citrullus lanatus HOM05D002336 ORTHO05D002526 7.4e-06 54.3 110 33.6
Glyma.05G189100 Glycine max HOM05D002336 ORTHO05D002526 7.4e-06 54.3 110 32.7
Rhsim02G0083000 Rhododendron simsii HOM05D002336 ORTHO05D002526 7.4e-06 54.3 112 32.1
GSVIVG01020782001 Vitis vinifera HOM05D002336 ORTHO05D002526 7.4e-06 54.3 110 33.6
CAN.G1463.20 Capsicum annuum HOM05D002336 ORTHO05D002526 9.7e-06 53.9 110 32.7
ClCG11G005330 Citrullus lanatus HOM05D002336 ORTHO05D002526 9.7e-06 53.9 119 32.8
Cc07_g16330 Coffea canephora HOM05D002336 ORTHO05D002526 9.7e-06 53.9 110 32.7
Manes.08G141900 Manihot esculenta HOM05D002336 ORTHO05D002526 9.7e-06 53.9 110 33.6
Pp3c9_19820 Physcomitrium patens HOM05D002336 ORTHO05D002526 9.7e-06 53.9 131 27.5
Potri.005G084900 Populus trichocarpa HOM05D002336 ORTHO05D002526 9.7e-06 53.9 110 33.6
Potri.007G080400 Populus trichocarpa HOM05D002336 ORTHO05D002526 9.7e-06 53.9 110 33.6
QL06p031971 Quercus lobata HOM05D002336 ORTHO05D002526 9.7e-06 53.9 110 33.6
Sed0026127 Sechium edule HOM05D002336 ORTHO05D002526 9.7e-06 53.9 110 34.5


User provided reference genes

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