Gene: Sopen04g007220
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g007220
- Transcript Identifier Sopen04g007220.2
- Gene Type Coding gene
- Location Spenn-ch04 : 5513028-5537924 : positive
Gene Family Information
- ID HOM05D002336
- #Genes/#Species 290/97
- Phylogenetic origin
- ID ORTHO05D002526
- #Genes/#Species 282/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen04g007220.2
Descriptions
- Description Non-catalytic subunit common to Nuclear DNA-dependent RNA polymerases IV and V | homologous to budding yeast RPB4. Role in gene silencing. Required for RNA-directed DNA methylation. | NRPD4 | FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity | INVOLVED IN: RNA interference, interphase, production of siRNA involved in RNA interference, DNA methylation on cytosine within a CHH sequence | LOCATED IN: DNA-directed RNA polymerase V complex, nucleus, DNA-directed RNA polymerase IV complex | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: HRDC-like , RNA polymerase II, Rpb4 , RNA polymerase II, Rpb4, core | BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0044237 | IEA | InterPro | cellular metabolic process | |
| GO:0006352 | ISO | PLAZA Homology (enrichment) | DNA-templated transcription, initiation | HOM05D002336 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | InterPro | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030880 | ISO | PLAZA Homology (enrichment) | RNA polymerase complex | HOM05D002336 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.1.6.2 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 4 |