Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 2.5e-248 861.7 447 100.0
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 6.7e-185 651.0 451 77.4
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 4.4e-184 648.3 452 76.1
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 2.2e-183 646.0 452 76.1
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.4e-182 642.5 451 75.8
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.4e-182 642.5 452 75.7
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 7.7e-181 637.5 447 74.9
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.3e-180 636.7 447 74.5
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 2.2e-180 636.0 451 74.9
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 8.5e-180 634.0 449 76.8
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.1e-179 633.6 454 74.2
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 5.5e-179 631.3 452 74.3
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 7.2e-179 630.9 453 75.3
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 9.4e-179 630.6 450 73.6
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 4.7e-178 628.2 457 73.7
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 6.1e-178 627.9 457 73.7
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 3.0e-177 625.5 453 72.8
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 8.8e-177 624.0 452 74.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.2e-176 623.6 447 74.3
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.2e-176 623.6 447 74.3
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.5e-176 623.2 450 73.3
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 2.0e-176 622.9 445 73.5
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 3.4e-176 622.1 450 74.0
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.3e-175 620.2 468 71.4
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.3e-175 620.2 454 72.7
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.8e-175 619.0 451 73.6
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 5.9e-173 611.3 453 74.0
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.3e-172 609.4 450 72.0
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 8.6e-172 607.4 449 71.9
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 2.5e-171 605.9 452 72.3
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 5.5e-171 604.7 452 72.3
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 7.2e-171 604.4 449 71.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 9.5e-171 604.0 453 71.7
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 1.2e-170 603.6 453 72.2
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 2.1e-170 602.8 447 71.6
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 2.1e-170 602.8 417 75.3
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 4.7e-170 601.7 447 71.4
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 6.1e-170 601.3 449 72.4
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.0e-169 600.5 456 71.7
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.0e-169 600.5 453 72.2
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.4e-169 600.1 453 72.2
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 4.0e-169 598.6 444 70.7
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 8.9e-169 597.4 453 73.1
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.2e-168 597.0 446 70.2
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.2e-168 597.0 453 71.5
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.5e-168 596.7 452 71.7
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 2.0e-168 596.3 461 71.1
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 2.6e-168 595.9 452 70.6
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 7.5e-168 594.3 421 75.8
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.3e-167 593.6 444 69.4
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 3.7e-167 592.0 450 70.7
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.9e-167 591.7 453 71.7
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 4.9e-167 591.7 452 70.8
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 7.0e-166 587.8 452 71.7
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.2e-165 587.0 459 70.8
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.6e-165 586.6 465 69.5
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.0e-165 586.3 452 70.4
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 2.0e-165 586.3 451 70.5
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 4.5e-165 585.1 452 70.1
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 7.8e-165 584.3 447 70.7
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.0e-164 583.9 453 70.9
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 2.9e-164 582.4 452 70.1
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 6.6e-164 581.3 449 67.9
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 8.6e-164 580.9 488 67.2
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.1e-163 580.5 450 69.3
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.2e-162 577.0 452 69.9
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 2.3e-161 572.8 451 69.2
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.1e-161 572.4 465 68.0
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 4.0e-161 572.0 504 64.9
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 6.8e-161 571.2 423 71.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 8.9e-161 570.9 457 69.8
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 5.8e-160 568.2 462 68.2
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.9e-159 565.8 455 68.8
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 9.2e-158 560.8 438 69.2
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.0e-156 557.4 429 70.6
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 5.6e-155 551.6 450 65.8
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 9.5e-155 550.8 417 71.2
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 2.1e-154 549.7 451 66.3
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 2.8e-154 549.3 451 66.1
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.6e-154 548.9 451 67.2
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.7e-154 548.5 506 62.5
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 4.7e-154 548.5 449 65.7
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 6.2e-154 548.1 451 67.0
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 8.0e-154 547.7 414 70.5
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.8e-153 546.6 447 66.0
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 4.0e-153 545.4 466 65.0
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.5e-152 543.5 452 65.7
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.5e-152 543.5 451 67.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 2.6e-152 542.7 451 66.3
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 7.5e-152 541.2 450 64.4
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 2.4e-150 536.2 453 65.3
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.4e-150 536.2 393 71.2
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 1.6e-149 533.5 451 64.7
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 6.0e-149 531.6 453 66.0
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.0e-148 530.8 450 64.9
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.7e-148 530.0 450 64.7
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 3.0e-148 529.3 450 64.4
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 3.9e-148 528.9 450 64.4
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 5.1e-148 528.5 451 64.7
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-147 527.3 423 71.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 7.3e-147 524.6 454 64.5
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 4.0e-145 518.8 451 63.6
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 2.6e-144 516.2 454 63.7
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 3.4e-144 515.8 454 63.7
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 4.4e-144 515.4 480 60.6
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.4e-142 510.4 480 61.0
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 4.1e-142 508.8 454 62.6
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 5.4e-142 508.4 451 63.2
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.7e-140 503.4 455 63.5
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 3.9e-140 502.3 447 63.8
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 8.6e-140 501.1 459 63.4
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.3e-139 499.2 456 62.1
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 2.8e-138 496.1 450 60.9
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 1.7e-135 486.9 455 62.0
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.1e-134 481.5 371 70.6
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.3e-132 477.2 424 61.1
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 3.9e-132 475.7 480 59.4
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.2e-128 464.2 412 63.1
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 2.2e-127 459.9 368 66.8
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 6.6e-124 448.4 413 60.0
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 2.6e-120 436.4 451 57.0
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 7.6e-120 434.9 478 53.6
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.9e-115 420.2 470 50.4
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 8.1e-114 414.8 398 60.1
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 1.7e-111 407.1 397 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.2e-110 402.9 503 48.1
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.7e-106 389.4 338 63.9
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 7.6e-104 381.7 447 51.0
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 6.5e-103 378.6 342 61.1
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 3.5e-101 372.9 496 44.4
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 5.7e-99 365.5 359 60.4
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 4.8e-90 335.9 458 48.7
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.4e-89 333.6 243 70.0
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 1.5e-78 297.7 549 39.3
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 7.2e-78 295.4 338 54.1
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 8.8e-76 288.5 488 43.0
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 3.1e-73 280.0 390 43.3
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.6e-72 277.7 517 37.1
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 2.2e-58 230.7 252 57.5
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 8.3e-58 228.8 258 53.9
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 2.5e-54 217.2 406 36.7
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 1.0e-52 211.8 173 61.8
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.3e-47 194.1 180 56.7
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 5.0e-47 193.0 180 57.8
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.3e-46 190.3 388 37.4
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 1.8e-44 184.5 171 55.6
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 2.6e-43 180.6 129 67.4
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 2.9e-42 177.2 266 41.4
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.1e-38 165.2 230 47.4
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 3.2e-33 147.1 134 64.2
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 4.1e-33 146.7 116 58.6
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 2.1e-29 134.4 348 31.9
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 8.9e-28 129.0 140 47.9
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 2.2e-26 124.4 108 59.3
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 4.9e-26 123.2 81 79.0
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 2.4e-25 120.9 140 53.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 3.2e-25 120.6 133 58.6
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 4.1e-25 120.2 147 53.1
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 3.3e-22 110.5 167 41.3
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 2.0e-19 101.3 299 28.1
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.2e-16 92.0 101 48.5
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.9e-14 84.7 56 67.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.9e-14 84.7 167 44.9
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 8.4e-10 69.3 66 59.1
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.4e-09 68.6 120 46.7
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.6e-08 65.1 39 82.1
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 2.1e-08 64.7 96 38.5
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.7e-08 64.3 42 81.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 8.7e-07 59.3 32 87.5
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 8.7e-07 59.3 40 72.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 1.9e-06 58.2 42 64.3
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 7.3e-06 56.2 196 29.1
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 7.3e-06 56.2 50 58.0


User provided reference genes

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