Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5E710T0 Lonicera japonica HOM05D001670 ORTHO05D018202 2.0e-68 262.3 134 100.0
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 3.4e-47 191.8 112 88.4
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 9.8e-47 190.3 112 86.6
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 2.2e-46 189.1 112 85.7
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 4.9e-46 188.0 112 84.8
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 4.1e-45 184.9 112 84.8
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 4.5e-44 181.4 112 83.0
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 4.5e-44 181.4 112 83.0
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 5.9e-44 181.0 112 82.1
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 5.9e-44 181.0 112 82.1
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 5.9e-44 181.0 112 82.1
Cpa.g.sc587.1 Carica papaya HOM05D001670 ORTHO05D002980 1.7e-43 179.5 112 82.1
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.1e-42 176.8 113 82.3
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 1.9e-42 176.0 112 77.7
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 3.3e-42 175.3 112 77.7
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 3.3e-42 175.3 112 78.6
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 4.2e-42 174.9 112 80.4
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.2e-42 174.9 112 78.6
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 4.2e-42 174.9 112 78.6
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 5.6e-42 174.5 112 81.2
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 7.2e-42 174.1 112 78.6
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 7.2e-42 174.1 112 79.5
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 9.5e-42 173.7 112 78.6
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 9.5e-42 173.7 112 75.0
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.2e-41 173.3 112 78.6
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 2.1e-41 172.6 112 78.6
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 2.8e-41 172.2 112 79.5
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 2.8e-41 172.2 112 78.6
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 2.8e-41 172.2 112 78.6
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 2.8e-41 172.2 112 77.7
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.8e-41 172.2 112 77.7
Actinidia12672 Actinidia chinensis HOM05D001670 ORTHO05D018202 4.7e-41 171.4 142 66.2
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 4.7e-41 171.4 112 78.6
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 4.7e-41 171.4 112 80.4
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 6.1e-41 171.0 112 77.7
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 6.1e-41 171.0 112 77.7
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 8.0e-41 170.6 112 77.7
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.0e-41 170.6 112 76.8
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 1.0e-40 170.2 112 77.7
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 1.4e-40 169.9 112 77.7
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 1.4e-40 169.9 112 79.5
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 1.8e-40 169.5 112 77.7
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 2.3e-40 169.1 112 79.5
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 3.0e-40 168.7 112 76.8
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 3.0e-40 168.7 112 78.6
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 3.0e-40 168.7 112 78.6
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 5.2e-40 167.9 112 75.9
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 6.8e-40 167.5 113 74.3
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 1.2e-39 166.8 113 79.6
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.2e-39 166.8 112 75.0
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 1.2e-39 166.8 118 73.7
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 1.5e-39 166.4 109 76.1
Haze_02720 Corylus avellana HOM05D001670 ORTHO05D002980 1.5e-39 166.4 109 76.1
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.5e-39 166.4 112 75.0
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.5e-39 166.4 112 75.0
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.5e-39 166.4 112 75.0
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 1.5e-39 166.4 113 79.6
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 3.4e-39 165.2 112 75.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 3.4e-39 165.2 113 79.6
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 3.4e-39 165.2 112 75.0
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 3.4e-39 165.2 112 76.8
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 5.7e-39 164.5 112 73.2
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 7.5e-39 164.1 112 74.1
Psat4g209440 Pisum sativum HOM05D001670 ORTHO05D002980 7.5e-39 164.1 112 74.1
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 9.8e-39 163.7 112 75.9
Oeu064576.1 Olea europaea HOM05D001670 ORTHO05D002980 9.8e-39 163.7 112 75.9
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 1.3e-38 163.3 112 78.6
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.7e-38 162.9 113 70.8
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 2.2e-38 162.5 112 76.8
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 2.2e-38 162.5 112 75.0
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 3.7e-38 161.8 112 71.4
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 6.4e-38 161.0 112 75.9
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 1.4e-37 159.8 112 72.3
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.8e-37 159.5 114 71.1
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 3.2e-37 158.7 112 74.1
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 3.2e-37 158.7 112 69.6
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 4.1e-37 158.3 112 70.5
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 4.1e-37 158.3 112 70.5
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 4.1e-37 158.3 112 75.0
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 5.4e-37 157.9 112 71.4
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-35 153.7 113 75.2
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-35 153.7 113 75.2
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-35 153.7 113 75.2
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-35 153.7 113 75.2
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-35 153.7 113 75.2
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.3e-35 153.3 112 70.5
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.3e-35 153.3 113 67.3
GSVIVG01000883001 Vitis vinifera HOM05D001670 ORTHO05D018202 1.3e-35 153.3 113 67.3
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.7e-35 152.9 113 73.5
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 2.9e-35 152.1 109 73.4
MD07G1112800 Malus domestica HOM05D001670 ORTHO05D002980 1.1e-34 150.2 113 74.3
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 1.1e-34 150.2 112 70.5
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 3.3e-34 148.7 112 68.8
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 4.3e-34 148.3 112 67.0
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 7.3e-34 147.5 119 63.9
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 7.3e-34 147.5 112 69.6
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 9.5e-34 147.1 110 69.1
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 1.2e-33 146.7 112 68.8
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 2.1e-33 146.0 113 62.8
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 2.8e-33 145.6 117 65.8
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 2.8e-33 145.6 112 65.2
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 8.0e-33 144.1 112 70.5
Glyma.03G118200 Glycine max HOM05D001670 ORTHO05D002980 8.0e-33 144.1 117 65.0
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.8e-32 142.9 112 66.1
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 6.8e-32 141.0 113 64.6
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 8.9e-32 140.6 112 69.6
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 8.9e-32 140.6 115 63.5
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 2.0e-31 139.4 119 63.0
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 4.4e-31 138.3 115 62.6
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 1.7e-30 136.3 112 62.5
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 2.2e-30 136.0 112 66.1
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 2.2e-30 136.0 112 66.1
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 2.2e-30 136.0 112 66.1
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 2.2e-30 136.0 112 66.1
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 2.2e-30 136.0 112 66.1
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 2.2e-30 136.0 112 60.7
ECA234G0500 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.9e-30 135.6 111 60.4
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 3.7e-30 135.2 115 59.1
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 4.9e-30 134.8 112 67.0
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 4.9e-30 134.8 112 65.2
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 4.9e-30 134.8 116 64.7
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 1.1e-29 133.7 112 64.3
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-29 133.7 112 64.3
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-29 133.7 112 64.3
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 1.1e-29 133.7 112 64.3
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.1e-29 133.7 112 64.3
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.4e-29 133.3 118 62.7
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 1.9e-29 132.9 113 66.4
A09p69250 Brassica napus HOM05D001670 ORTHO05D002980 1.9e-29 132.9 113 66.4
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 1.9e-29 132.9 113 66.4
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.9e-29 132.9 113 66.4
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.9e-29 132.9 113 66.4
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 2.4e-29 132.5 112 64.3
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.4e-29 132.5 112 66.1
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.4e-29 132.5 112 66.1
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.4e-29 132.5 112 66.1
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 3.2e-29 132.1 119 59.7
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 5.4e-29 131.3 113 58.4
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 7.0e-29 131.0 112 65.2
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 7.0e-29 131.0 112 65.2
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 9.2e-29 130.6 112 64.3
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.0e-28 127.9 112 58.0
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 1.3e-27 126.7 82 72.0
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 2.3e-27 125.9 111 57.7
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 1.1e-26 123.6 112 56.2
Thecc.03G154100 Theobroma cacao HOM05D001670 ORTHO05D002980 2.5e-26 122.5 109 58.7
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 3.6e-25 118.6 113 53.1
PRCOL_00002164 Prasinoderma coloniale HOM05D001670 ORTHO05D002980 2.3e-24 115.9 109 53.2
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 5.8e-23 111.3 82 75.6
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 1.7e-22 109.8 126 47.6
C09p00060 Brassica napus HOM05D001670 ORTHO05D002980 7.1e-21 104.4 108 52.8
BraA09t35680Z Brassica rapa HOM05D001670 ORTHO05D002980 7.1e-21 104.4 108 52.8
Cre14.g632950 Chlamydomonas reinhardtii HOM05D001670 ORTHO05D002980 7.8e-20 100.9 85 56.5
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 1.0e-19 100.5 119 50.4
AagrBONN_evm.TU.Sc2ySwM_362.1757 Anthoceros agrestis HOM05D001670 ORTHO05D002980 3.0e-19 99.0 120 44.2
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 3.9e-19 98.6 109 47.7
CSS0049488 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.1e-16 89.0 97 48.5
Cfa026075 Carpinus fangiana HOM05D001670 ORTHO05D002980 3.2e-13 79.0 88 42.0
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.2e-12 77.0 70 64.3
MBI17_g09694_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 9.6e-10 67.4 84 44.0


User provided reference genes

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