Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 3.1e-65 251.5 115 100.0
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 5.6e-51 204.1 115 78.3
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 9.6e-51 203.4 115 78.3
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 76.5
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 4.8e-50 201.1 115 76.5
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 4.8e-50 201.1 115 75.7
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 6.2e-50 200.7 115 78.3
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 6.2e-50 200.7 114 76.3
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 8.1e-50 200.3 115 75.7
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 8.1e-50 200.3 115 76.5
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 8.1e-50 200.3 115 76.5
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 8.1e-50 200.3 115 75.7
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 8.1e-50 200.3 115 75.7
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.1e-49 199.9 115 76.5
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.8e-49 199.1 115 74.8
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.8e-49 199.1 115 75.7
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.8e-49 199.1 115 75.7
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 1.8e-49 199.1 115 77.4
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 2.4e-49 198.7 115 76.5
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 3.1e-49 198.4 115 75.7
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 4.0e-49 198.0 115 75.7
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 4.0e-49 198.0 115 76.5
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 4.0e-49 198.0 115 74.8
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.0e-49 198.0 115 75.7
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 76.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 75.7
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 6.9e-49 197.2 115 75.7
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 6.9e-49 197.2 115 74.8
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 9.0e-49 196.8 115 74.8
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 9.0e-49 196.8 115 75.7
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.2e-48 196.4 115 74.8
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.2e-48 196.4 115 73.0
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.2e-48 196.4 115 75.7
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.2e-48 196.4 115 74.8
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.5e-48 196.1 115 75.7
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.5e-48 196.1 115 74.8
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.5e-48 196.1 115 75.7
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 2.6e-48 195.3 115 75.7
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.6e-48 195.3 115 74.8
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 74.8
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 73.0
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 75.7
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 75.7
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 75.7
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 75.7
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 75.7
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.4e-48 194.9 115 73.9
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.9
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 5.8e-48 194.1 115 74.8
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 5.8e-48 194.1 115 75.7
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 7.6e-48 193.7 115 74.8
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 7.6e-48 193.7 115 73.9
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 7.6e-48 193.7 115 73.9
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.6e-48 193.7 114 72.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 9.9e-48 193.4 115 73.0
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 9.9e-48 193.4 115 73.0
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 9.9e-48 193.4 115 75.7
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 1.3e-47 193.0 115 74.8
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.7e-47 192.6 115 73.0
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.7e-47 192.6 115 74.8
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.2e-47 192.2 115 73.0
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 2.2e-47 192.2 115 73.9
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.8e-47 191.4 115 72.2
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.8e-47 191.4 115 72.2
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 3.8e-47 191.4 115 72.2
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 4.9e-47 191.0 115 72.2
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 6.4e-47 190.7 115 73.0
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 8.4e-47 190.3 115 72.2
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.1e-46 189.9 115 72.2
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-46 189.5 115 71.3
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.4e-46 189.5 115 71.3
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.4e-46 189.5 115 71.3
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.4e-46 189.5 115 71.3
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.4e-46 189.5 115 70.4
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 3.2e-46 188.3 115 71.3
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 3.2e-46 188.3 115 71.3
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 5.4e-46 187.6 115 70.4
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 5.4e-46 187.6 115 70.4
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 5.4e-46 187.6 115 70.4
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 70.4
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 7.1e-46 187.2 135 65.2
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 70.4
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 70.4
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 70.4
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.2e-45 186.4 115 69.6
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 2.1e-45 185.7 115 69.6
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 2.1e-45 185.7 115 68.7
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.7e-45 185.3 115 69.6
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 2.7e-45 185.3 115 69.6
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 2.7e-45 185.3 115 69.6
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.6e-45 184.5 115 69.6
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 7.9e-45 183.7 115 68.7
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.0e-44 183.3 134 64.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.3e-44 182.2 112 72.3
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 2.3e-44 182.2 115 69.6
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.0e-44 181.8 115 68.7
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 5.1e-44 181.0 115 65.2
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 1.1e-43 179.9 105 75.2
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.1e-43 179.9 105 75.2
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.5e-43 179.5 115 69.6
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.5e-43 179.5 115 68.7
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.5e-43 179.5 107 72.9
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.9e-43 179.1 105 74.3
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 7.3e-43 177.2 114 67.5
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 1.3e-42 176.4 105 73.3
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 6.2e-42 174.1 115 63.5
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 5.3e-41 171.0 113 66.4
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 5.3e-41 171.0 113 66.4
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 6.9e-41 170.6 105 70.5
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 9.0e-41 170.2 105 70.5
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.2e-40 169.9 128 64.1
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 2.6e-40 168.7 105 69.5
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.5e-40 167.9 114 63.2
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 5.8e-40 167.5 115 65.2
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.3e-39 166.4 105 68.6
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.8e-39 164.9 114 60.5
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 4.9e-39 164.5 98 76.5
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 8.4e-39 163.7 112 63.4
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-38 163.3 112 63.4
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 1.1e-38 163.3 112 63.4
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 9.3e-38 160.2 114 60.5
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 7.9e-37 157.1 115 61.7
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.3e-35 151.8 130 55.4
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.6e-35 151.0 115 54.8
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 6.2e-34 147.5 88 75.0
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.1e-33 146.7 105 64.8
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 9.0e-33 143.7 180 44.4
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 2.6e-32 142.1 88 73.9
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 4.5e-32 141.4 88 72.7
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.7e-31 139.4 115 57.4
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.9e-31 138.7 80 76.2
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 3.2e-30 135.2 114 55.3
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 4.2e-30 134.8 86 70.9
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.2e-29 133.3 83 71.1
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.6e-29 132.9 80 73.8
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 7.9e-29 130.6 82 70.7
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 1.0e-28 130.2 80 71.2
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.8e-28 129.4 79 69.6
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.3e-28 129.0 84 69.0
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-27 126.7 80 68.8
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 1.1e-27 126.7 81 67.9
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.1e-27 126.7 94 60.6
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 9.6e-27 123.6 77 71.4
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 3.7e-26 121.7 81 64.2
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 8.2e-26 120.6 80 63.8
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.4e-25 119.8 81 61.7
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.0e-23 113.6 110 48.2
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.6e-21 106.3 111 45.0
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 1.3e-20 103.2 97 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 2.2e-18 95.9 114 42.1
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 3.1e-17 92.0 113 44.2
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.0e-16 89.4 117 37.6
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 2.0e-16 89.4 64 60.9
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 7.7e-16 87.4 56 69.6
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.3e-15 86.7 61 62.3
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 6.5e-15 84.3 113 41.6
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 1.9e-14 82.8 71 50.7
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.2e-13 80.1 54 68.5
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 3.9e-12 75.1 49 65.3
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.5e-11 73.2 54 61.1
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 1.3e-10 70.1 74 40.5
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 1.8e-09 66.2 105 34.3
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.2e-07 59.3 36 72.2
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.9e-06 56.2 88 34.1


User provided reference genes

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