Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P67T19 Lonicera japonica HOM05D001948 ORTHO05D001873 1.2e-91 339.7 160 100.0
Dinv35908 Davidia involucrata HOM05D001948 ORTHO05D001873 3.0e-58 228.8 146 74.7
Dinv39253 Davidia involucrata HOM05D001948 ORTHO05D001873 1.1e-57 226.9 146 74.0
Actinidia38090 Actinidia chinensis HOM05D001948 ORTHO05D001873 2.2e-53 212.6 146 67.8
Duzib093G1167 Durio zibethinus HOM05D001948 ORTHO05D001873 7.1e-52 207.6 146 65.8
vmacro04576 Vaccinium macrocarpon HOM05D001948 ORTHO05D001873 3.5e-51 205.3 146 68.5
GSVIVG01009392001 Vitis vinifera HOM05D001948 ORTHO05D001873 1.3e-50 203.4 146 65.8
Potri.014G020900 Populus trichocarpa HOM05D001948 ORTHO05D001873 4.3e-49 198.4 138 65.9
Eucgr.F00142 Eucalyptus grandis HOM05D001948 ORTHO05D001873 2.8e-48 195.7 154 62.3
Duzib116G0564 Durio zibethinus HOM05D001948 ORTHO05D001873 4.7e-48 194.9 146 63.0
TWI09G1266 Tripterygium wilfordii HOM05D001948 ORTHO05D001873 1.4e-47 193.4 146 61.6
Prupe.1G427200 Prunus persica HOM05D001948 ORTHO05D001873 6.8e-47 191.0 150 62.7
Ciclev10003482m.g Citrus clementina HOM05D001948 ORTHO05D001873 2.0e-46 189.5 146 61.0
Manes.18G043400 Manihot esculenta HOM05D001948 ORTHO05D001873 2.6e-46 189.1 129 66.7
Thecc.08G093900 Theobroma cacao HOM05D001948 ORTHO05D001873 2.6e-46 189.1 146 60.3
TAR625G0918 Trochodendron aralioides HOM05D001948 ORTHO05D001873 5.8e-46 188.0 146 61.6
Nn1g04652 Nelumbo nucifera HOM05D001948 ORTHO05D001873 2.2e-45 186.0 146 60.3
CiPaw.15G048600 Carya illinoinensis HOM05D001948 ORTHO05D001873 6.4e-45 184.5 137 62.8
Sc02g0007640 Simmondsia chinensis HOM05D001948 ORTHO05D001873 1.4e-44 183.3 146 56.8
RcHm_v2.0_Chr6g0309061 Rosa chinensis HOM05D001948 ORTHO05D001873 2.1e-43 179.5 146 61.0
FvH4_2g33452 Fragaria vesca HOM05D001948 ORTHO05D001873 4.6e-43 178.3 146 58.9
CiPaw.16G034800 Carya illinoinensis HOM05D001948 ORTHO05D001873 7.8e-43 177.6 152 57.2
MD08G1089900 Malus domestica HOM05D001948 ORTHO05D001873 7.8e-43 177.6 150 60.0
Gohir.D02G089800 Gossypium hirsutum HOM05D001948 ORTHO05D001873 1.6e-40 169.9 146 55.5
FAN20G1070 Fragaria x ananassa HOM05D001948 ORTHO05D001873 2.1e-40 169.5 154 55.2
Gorai.005G100500 Gossypium raimondii HOM05D001948 ORTHO05D001873 2.8e-40 169.1 146 55.5
Nn5g30467 Nelumbo nucifera HOM05D001948 ORTHO05D001873 8.1e-40 167.5 154 53.2
FAN27G0653 Fragaria x ananassa HOM05D001948 ORTHO05D001873 1.4e-39 166.8 146 56.8
Sabra14G0014000 Salix brachista HOM05D001948 ORTHO05D001873 9.9e-38 160.6 111 66.7
Haze_18098 Corylus avellana HOM05D001948 ORTHO05D001873 2.2e-37 159.5 121 62.0
arahy.Tifrunner.gnm1.ann1.5G0R51 Arachis hypogaea HOM05D001948 ORTHO05D001873 4.6e-35 151.8 146 47.3
Cc10_g05330 Coffea canephora HOM05D001948 ORTHO05D001873 6.0e-35 151.4 109 65.1
Glyma.04G043900 Glycine max HOM05D001948 ORTHO05D001873 7.8e-35 151.0 137 54.7
CSS0028423 Camellia sinensis var. sinensis HOM05D001948 ORTHO05D001873 2.3e-34 149.4 99 72.7
Nitab4.5_0003643g0010 Nicotiana tabacum HOM05D001948 ORTHO05D001873 2.3e-34 149.4 105 63.8
Actinidia13031 Actinidia chinensis HOM05D001948 ORTHO05D001873 1.5e-33 146.7 95 70.5
CANSAT25G1733 Cannabis sativa HOM05D001948 ORTHO05D001873 1.5e-33 146.7 147 47.6
Psat6g014360 Pisum sativum HOM05D001948 ORTHO05D001873 2.5e-33 146.0 140 50.7
PSO675G6254 Papaver somniferum HOM05D001948 ORTHO05D001873 4.3e-33 145.2 144 50.7
Aqoxy6G02827 Aquilegia oxysepala HOM05D001948 ORTHO05D001873 9.6e-33 144.1 154 45.5
Phvul.009G069600 Phaseolus vulgaris HOM05D001948 ORTHO05D001873 9.6e-33 144.1 130 53.8
QL02p002890 Quercus lobata HOM05D001948 ORTHO05D001873 4.8e-32 141.7 101 65.3
Lj5g0009546 Lotus japonicus HOM05D001948 ORTHO05D001873 2.4e-31 139.4 144 45.8
Atru.chr13.785 Acer truncatum HOM05D001948 ORTHO05D001873 1.2e-30 137.1 95 69.5
Nitab4.5_0000569g0140 Nicotiana tabacum HOM05D001948 ORTHO05D001873 1.3e-29 133.7 95 65.3
PGR083G0798 Punica granatum HOM05D001948 ORTHO05D001873 1.1e-28 130.6 97 61.9
CDE04G1335 Ceratophyllum demersum HOM05D001948 ORTHO05D001873 1.4e-28 130.2 148 43.2
Glyma.06G044100 Glycine max HOM05D001948 ORTHO05D001873 9.3e-28 127.5 116 54.3
Medtr1g018650 Medicago truncatula HOM05D001948 ORTHO05D001873 7.9e-27 124.4 129 44.2
Ca_13237_v3 Cicer arietinum L. HOM05D001948 ORTHO05D001873 1.0e-26 124.0 127 48.0
Lalb_Chr08g0245441 Lupinus albus HOM05D001948 ORTHO05D001873 1.0e-26 124.0 109 53.2
Gohir.A02G081800 Gossypium hirsutum HOM05D001948 ORTHO05D001873 1.8e-26 123.2 95 58.9
COL.COLO4_28563 Corchorus olitorius HOM05D001948 ORTHO05D001873 8.1e-24 114.4 113 53.1
ATR0661G445 Amborella trichopoda HOM05D001948 ORTHO05D001873 5.8e-22 108.2 110 45.5
FAN15G2277 Fragaria x ananassa HOM05D000232 ORTHO05D001873 1.4e-20 103.6 85 57.6
MD15G1074400 Malus domestica HOM05D001948 ORTHO05D001873 1.4e-15 87.0 130 42.3
Lj6g0010194 Lotus japonicus HOM05D001948 ORTHO05D001873 6.9e-15 84.7 121 35.5
Sc12g0000670 Simmondsia chinensis HOM05D001948 ORTHO05D001873 6.9e-15 84.7 125 34.4
Cc01_g14240 Coffea canephora HOM05D001948 ORTHO05D001873 1.5e-14 83.6 152 28.3
CSS0014491 Camellia sinensis var. sinensis HOM05D001948 ORTHO05D001873 2.0e-14 83.2 125 32.0
MD03G1070000 Malus domestica HOM05D001948 ORTHO05D001873 2.0e-14 83.2 119 31.1
ATR0618G095 Amborella trichopoda HOM05D001948 ORTHO05D001873 4.5e-14 82.0 140 30.0
CiPaw.14G059300 Carya illinoinensis HOM05D001948 ORTHO05D001873 4.5e-14 82.0 125 32.8
COL.COLO4_19162 Corchorus olitorius HOM05D000683 ORTHO05D000507 4.5e-14 82.0 121 30.6
MD11G1073800 Malus domestica HOM05D001948 ORTHO05D001873 4.5e-14 82.0 119 32.8
Actinidia08264 Actinidia chinensis HOM05D001948 ORTHO05D001873 5.8e-14 81.6 66 62.1
Nn2g13714 Nelumbo nucifera HOM05D001948 ORTHO05D001873 5.8e-14 81.6 125 30.4
CiPaw.13G077200 Carya illinoinensis HOM05D001948 ORTHO05D001873 1.0e-13 80.9 125 32.0
SEGI_19639 Sequoiadendron giganteum HOM05D001948 ORTHO05D001873 1.7e-13 80.1 126 28.6
Manes.01G161200 Manihot esculenta HOM05D001948 ORTHO05D001873 6.5e-13 78.2 125 32.8
RcHm_v2.0_Chr5g0069661 Rosa chinensis HOM05D001948 ORTHO05D001873 8.4e-13 77.8 121 33.1
TAR633G1533 Trochodendron aralioides HOM05D001948 ORTHO05D001873 8.4e-13 77.8 125 31.2
Ciclev10030173m.g Citrus clementina HOM05D001948 ORTHO05D001873 1.1e-12 77.4 126 28.6
Duzib170G0625 Durio zibethinus HOM05D001948 ORTHO05D001873 1.4e-12 77.0 120 33.3
TWI31G0364 Tripterygium wilfordii HOM05D001948 ORTHO05D001873 1.9e-12 76.6 136 30.1
Hma1.2p1_0962F.1_g241890 Hydrangea macrophylla HOM05D001948 ORTHO05D001873 4.2e-12 75.5 128 31.2
Duzib128G0126 Durio zibethinus HOM05D001948 ORTHO05D001873 9.3e-12 74.3 110 34.5
PSO339G1414 Papaver somniferum HOM05D001948 ORTHO05D001873 9.3e-12 74.3 117 32.5
TAR636G0792 Trochodendron aralioides HOM05D001948 ORTHO05D001873 9.3e-12 74.3 122 30.3
Duzib168G1714 Durio zibethinus HOM05D001948 ORTHO05D001873 1.2e-11 73.9 121 29.8
Eucgr.J01909 Eucalyptus grandis HOM05D001948 ORTHO05D001873 1.2e-11 73.9 119 31.9
TWI53G2049 Tripterygium wilfordii HOM05D001948 ORTHO05D001873 1.2e-11 73.9 143 30.8
BcaB01g06229 Brassica carinata HOM05D001948 ORTHO05D001873 2.1e-11 73.2 133 31.6
C03p00470 Brassica napus HOM05D001948 ORTHO05D001873 2.1e-11 73.2 133 31.6
BolC3t12612H Brassica oleracea HOM05D001948 ORTHO05D001873 2.1e-11 73.2 133 31.6
Hund18845 Selenicereus undatus HOM05D001948 ORTHO05D001873 2.7e-11 72.8 127 28.3
Thecc.09G301400 Theobroma cacao HOM05D001948 ORTHO05D001873 2.7e-11 72.8 126 28.6
Actinidia16096 Actinidia chinensis HOM05D001948 ORTHO05D001873 3.5e-11 72.4 125 30.4
AL4G35220 Arabidopsis lyrata HOM05D001948 ORTHO05D001873 3.5e-11 72.4 101 37.6
BcaC01g05563 Brassica carinata HOM05D001948 ORTHO05D001873 3.5e-11 72.4 103 35.0
Duzib093G1794 Durio zibethinus HOM05D001948 ORTHO05D001873 3.5e-11 72.4 114 32.5
Medtr3g463920 Medicago truncatula HOM05D001948 ORTHO05D001873 3.5e-11 72.4 121 31.4
Aa31LG5G23750 Aethionema arabicum HOM05D001948 ORTHO05D001873 4.6e-11 72.0 103 34.0
PGR119G1768 Punica granatum HOM05D001948 ORTHO05D001873 4.6e-11 72.0 121 31.4
Solyc09g005320.3 Solanum lycopersicum HOM05D001948 ORTHO05D001873 4.6e-11 72.0 152 27.6
AL6G10620 Arabidopsis lyrata HOM05D001948 ORTHO05D001873 6.1e-11 71.6 102 39.2
AT5G01450 Arabidopsis thaliana HOM05D001948 ORTHO05D001873 6.1e-11 71.6 102 39.2
Potri.001G251900 Populus trichocarpa HOM05D001948 ORTHO05D001873 6.1e-11 71.6 115 32.2
PGR004G0061 Punica granatum HOM05D001948 ORTHO05D001873 6.1e-11 71.6 109 33.9
Thecc.05G015900 Theobroma cacao HOM05D001948 ORTHO05D001873 6.1e-11 71.6 109 32.1
A03p00300 Brassica napus HOM05D001948 ORTHO05D001873 1.0e-10 70.9 102 38.2
BraA03t09421Z Brassica rapa HOM05D001948 ORTHO05D001873 1.0e-10 70.9 102 38.2
THA.LOC104816193 Tarenaya hassleriana HOM05D001948 ORTHO05D001873 1.0e-10 70.9 102 37.3
Gohir.D05G089600 Gossypium hirsutum HOM05D001948 ORTHO05D001873 1.3e-10 70.5 121 25.6
PSO339G0928 Papaver somniferum HOM05D001948 ORTHO05D001873 1.3e-10 70.5 111 30.6
CARHR211820 Cardamine hirsuta HOM05D001948 ORTHO05D001873 1.8e-10 70.1 102 38.2
AUR62001642 Chenopodium quinoa HOM05D001948 ORTHO05D001873 1.8e-10 70.1 122 32.0
Sp6g40740 Schrenkiella parvula HOM05D001948 ORTHO05D001873 1.8e-10 70.1 102 37.3
Aa31LG1G23080 Aethionema arabicum HOM05D001948 ORTHO05D002297 2.3e-10 69.7 133 30.8
Carub.0006s0038 Capsella rubella HOM05D001948 ORTHO05D001873 2.3e-10 69.7 102 37.3
vmacro02959 Vaccinium macrocarpon HOM05D001948 ORTHO05D001873 2.3e-10 69.7 141 29.1
AT2G38185 Arabidopsis thaliana HOM05D001948 ORTHO05D001873 3.0e-10 69.3 103 35.9
arahy.Tifrunner.gnm1.ann1.EV27NL Arachis hypogaea HOM05D001948 ORTHO05D001873 3.9e-10 68.9 106 35.8
BcaB01g03724 Brassica carinata HOM05D001948 ORTHO05D001873 3.9e-10 68.9 103 33.0
CiPaw.09G209300 Carya illinoinensis HOM05D001948 ORTHO05D001873 3.9e-10 68.9 109 33.0
QL01p038315 Quercus lobata HOM05D001948 ORTHO05D001873 3.9e-10 68.9 128 29.7
Cc06_g01340 Coffea canephora HOM05D001948 ORTHO05D001873 5.1e-10 68.6 129 28.7
MBI18_g24469_MAGBIO Magnolia biondii HOM05D001948 ORTHO05D001873 5.1e-10 68.6 113 32.7
TWI77G0956 Tripterygium wilfordii HOM05D001948 ORTHO05D001873 5.1e-10 68.6 112 31.2
Gohir.A05G088600 Gossypium hirsutum HOM05D001948 ORTHO05D001873 6.7e-10 68.2 121 25.6
THA.LOC104807018 Tarenaya hassleriana HOM05D001948 ORTHO05D001873 6.7e-10 68.2 113 29.2
Aqoxy4G02557 Aquilegia oxysepala HOM05D001948 ORTHO05D001873 1.1e-09 67.4 153 24.8
Aa31LG6G9270 Aethionema arabicum HOM05D001948 ORTHO05D001873 1.5e-09 67.0 107 35.5
CARHR132790 Cardamine hirsuta HOM05D001948 ORTHO05D001873 1.5e-09 67.0 89 38.2
Cpa.g.sc11.143 Carica papaya HOM05D001948 ORTHO05D001873 1.5e-09 67.0 103 32.0
AUR62020135 Chenopodium quinoa HOM05D001948 ORTHO05D001873 1.5e-09 67.0 126 31.0
PSO384G0593 Papaver somniferum HOM05D001948 ORTHO05D001873 1.5e-09 67.0 102 29.4
Gorai.009G092000 Gossypium raimondii HOM05D001948 ORTHO05D001873 2.5e-09 66.2 122 25.4
AT2G38220 Arabidopsis thaliana HOM05D001948 ORTHO05D001873 5.7e-09 65.1 99 35.4
Pp3c22_17440 Physcomitrium patens HOM05D001948 ORTHO05D001873 5.7e-09 65.1 112 28.6
QL07p019775 Quercus lobata HOM05D001948 ORTHO05D001873 5.7e-09 65.1 109 32.1
EL10Ac7g16171 Beta vulgaris HOM05D001948 ORTHO05D001873 1.3e-08 63.9 134 27.6
Sabra16G0153200 Salix brachista HOM05D001948 ORTHO05D001873 1.3e-08 63.9 135 28.1
AL4G35210 Arabidopsis lyrata HOM05D001948 ORTHO05D001873 1.6e-08 63.5 103 35.0
Medtr7g068580 Medicago truncatula HOM05D001948 ORTHO05D001873 2.2e-08 63.2 129 26.4
Glyma.18G201500 Glycine max HOM05D001948 ORTHO05D001873 3.7e-08 62.4 110 31.8
Lj1g0003596 Lotus japonicus HOM05D001948 ORTHO05D001873 3.7e-08 62.4 98 34.7
Nn2g11508 Nelumbo nucifera HOM05D001948 ORTHO05D001873 4.8e-08 62.0 109 31.2
Potri.016G116300 Populus trichocarpa HOM05D001948 ORTHO05D001873 4.8e-08 62.0 130 26.2
MD04G1153100 Malus domestica HOM05D001948 ORTHO05D001873 6.3e-08 61.6 109 31.2
Phvul.008G103400 Phaseolus vulgaris HOM05D001948 ORTHO05D001873 8.2e-08 61.2 110 30.9
CARHR132810 Cardamine hirsuta HOM05D001948 ORTHO05D001873 1.1e-07 60.8 102 32.4
SGA_v2.0_scaffold75G25020 Striga asiatica HOM05D001948 ORTHO05D001873 1.8e-07 60.1 119 27.7
Glyma.07G150500 Glycine max HOM05D001948 ORTHO05D001873 2.4e-07 59.7 109 33.0
Nitab4.5_0002624g0040 Nicotiana tabacum HOM05D001948 ORTHO05D001873 3.1e-07 59.3 135 27.4
Carub.0004s2017 Capsella rubella HOM05D001948 ORTHO05D001873 5.3e-07 58.5 88 34.1
Mapoly0058s0040 Marchantia polymorpha HOM05D001948 ORTHO05D001873 6.9e-07 58.2 106 32.1
Nn2g11506 Nelumbo nucifera HOM05D001948 ORTHO05D001873 6.9e-07 58.2 97 32.0
Prupe.6G277400 Prunus persica HOM05D001948 ORTHO05D001873 9.0e-07 57.8 92 34.8
Haze_21004 Corylus avellana HOM05D001948 ORTHO05D001873 1.5e-06 57.0 80 35.0
DCAR_028848 Daucus carota HOM05D000768 ORTHO05D001873 1.5e-06 57.0 76 38.2
Nitab4.5_0000490g0070 Nicotiana tabacum HOM05D001948 ORTHO05D001873 1.5e-06 57.0 135 26.7
Psat3g129320 Pisum sativum HOM05D001948 ORTHO05D001873 1.5e-06 57.0 119 26.9
Sopen09g001290 Solanum pennellii HOM05D001948 ORTHO05D001873 3.4e-06 55.8 152 24.3
Carub.0004s2018 Capsella rubella HOM05D001948 ORTHO05D001873 1.0e-05 54.3 103 34.0


User provided reference genes

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